e314363411293556f33418abe8923ad1e8bc496a markd Fri Oct 2 21:36:04 2026 -0700 Revert the TSS nesting on master; it lives on superTrackNesting. refs #35528 Putting PRO-cap and ProCapNet inside a transcriptionStart superTrack needs the nesting fix in #38460, which is not released. These tracks were released in 3bee9e40921, so on beta and the RR hgTrackDb would drop the container and trackDbToTxt would write an hs1 curated hub whose members name a parent stanza that is not there. The work is on the superTrackNesting branch and can come back once #38460 ships. diff --git src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra index e3b08cd3824..5b27fca253f 100644 --- src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra +++ src/hg/makeDb/trackDb/human/hs1/transcriptionStart.ra @@ -1,220 +1,213 @@ # Generated by hg/makeDb/outside/proCapNet/proCapNetTrackDb for hs1. # Do not edit by hand, edit the script and regenerate. -track transcriptionStart -superTrack on show -group rna -shortLabel Transcription Initiation (TSS) -longLabel Transcription initiation (TSS) - track proCapNet superTrack on show - parent transcriptionStart group rna shortLabel ProCapNet longLabel ProCapNet predicted PRO-cap track proCapNet_A673_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 0,114,178 shortLabel A673 Predicted longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, plus up minus down priority 1 track proCapNet_A673_pred_pos parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.pos.bw color 0,114,178 shortLabel A673 Predicted + longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, plus strand track proCapNet_A673_pred_neg parent proCapNet_A673_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/A673.proCapNet.neg.bw color 0,114,178 altColor 0,114,178 shortLabel A673 Predicted - longLabel A673 (ENCSR072YCM) ProCapNet predicted PRO-cap, minus strand track proCapNet_Caco-2_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 213,94,0 shortLabel Caco-2 Predicted longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, plus up minus down priority 2 track proCapNet_Caco-2_pred_pos parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.pos.bw color 213,94,0 shortLabel Caco-2 Predicted + longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, plus strand track proCapNet_Caco-2_pred_neg parent proCapNet_Caco-2_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Caco-2.proCapNet.neg.bw color 213,94,0 altColor 213,94,0 shortLabel Caco-2 Predicted - longLabel Caco-2 (ENCSR182QNJ) ProCapNet predicted PRO-cap, minus strand track proCapNet_Calu3_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 0,158,115 shortLabel Calu3 Predicted longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, plus up minus down priority 3 track proCapNet_Calu3_pred_pos parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.pos.bw color 0,158,115 shortLabel Calu3 Predicted + longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, plus strand track proCapNet_Calu3_pred_neg parent proCapNet_Calu3_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/Calu3.proCapNet.neg.bw color 0,158,115 altColor 0,158,115 shortLabel Calu3 Predicted - longLabel Calu3 (ENCSR797DEF) ProCapNet predicted PRO-cap, minus strand track proCapNet_HUVEC_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 204,121,167 shortLabel HUVEC Predicted longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, plus up minus down priority 4 track proCapNet_HUVEC_pred_pos parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.pos.bw color 204,121,167 shortLabel HUVEC Predicted + longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, plus strand track proCapNet_HUVEC_pred_neg parent proCapNet_HUVEC_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/HUVEC.proCapNet.neg.bw color 204,121,167 altColor 204,121,167 shortLabel HUVEC Predicted - longLabel HUVEC (ENCSR801ECP) ProCapNet predicted PRO-cap, minus strand track proCapNet_K562_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 230,159,0 shortLabel K562 Predicted longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, plus up minus down priority 5 track proCapNet_K562_pred_pos parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.pos.bw color 230,159,0 shortLabel K562 Predicted + longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, plus strand track proCapNet_K562_pred_neg parent proCapNet_K562_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/K562.proCapNet.neg.bw color 230,159,0 altColor 230,159,0 shortLabel K562 Predicted - longLabel K562 (ENCSR740IPL) ProCapNet predicted PRO-cap, minus strand track proCapNet_MCF10A_pred superTrack proCapNet full container multiWig aggregate solidOverlay showSubtrackColorOnUi on type bigWig autoScale on alwaysZero on maxHeightPixels 100:40:8 windowingFunction maximum configurable on html proCapNet color 86,180,233 shortLabel MCF10A Predicted longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, plus up minus down priority 6 track proCapNet_MCF10A_pred_pos parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.pos.bw color 86,180,233 shortLabel MCF10A Predicted + longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, plus strand track proCapNet_MCF10A_pred_neg parent proCapNet_MCF10A_pred type bigWig bigDataUrl /gbdb/hs1/proCapNet/pred/MCF10A.proCapNet.neg.bw color 86,180,233 altColor 86,180,233 shortLabel MCF10A Predicted - longLabel MCF10A (ENCSR860TYZ) ProCapNet predicted PRO-cap, minus strand