65091fe6f6487c23d650a144e947fc1c582d3f40 max Tue Apr 21 02:16:16 2026 -0700 abelSv: move under lrSv supertrack as short-read comparison subtrack Move the Abel et al. 2020 CCDG 17,795-genome SV callset from a top-level hg38 track to a subtrack of the lrSv supertrack (parallel to onekg3202Sr) and relabel shortLabel/longLabel to flag Illumina short-read provenance. The same bigBed is now visible on hg38 in the long-read SV browsing context. Also: - Clarify abelSv.html variant counts: 738,624 upstream unique SVs across both callsets, 737,998 after B37->hg38 liftOver (626 unmapped). B38=458,106, B37lift=279,892. - lrSv.html: fix triple-slash https:/// in the Ebert et al. Science reference URL. - bigBed.html: add closing </li> on the extra-fields pipe-separator bullet and tighten a comma in the same sentence. refs #36258, refs #37376 diff --git src/hg/htdocs/goldenPath/help/bigBed.html src/hg/htdocs/goldenPath/help/bigBed.html index 1d169f28264..65a2f6d9247 100755 --- src/hg/htdocs/goldenPath/help/bigBed.html +++ src/hg/htdocs/goldenPath/help/bigBed.html @@ -318,32 +318,32 @@ "<a href="trackDb/trackDbHub.html#labelField">labelField</a>" for more information.</li> <li> When you click on features, the contents of all extra fields are shown as a table. You can modify the layout of the resulting page with the trackDb settings "<a href="trackDb/trackDbHub.html#skipFields">skipFields</a>", "<a href="trackDb/trackDbHub.html#sepFields">sepFields</a>" and "<a href="trackDb/trackDbHub.html#skipEmptyFields">skipEmptyFields</a>", and transform text fields into links with the "<a href="trackDb/trackDbHub.html#urls">urls</a>" trackDb setting.</li> <li> Extra fields that start with the character "_" are reserved for internal use (special display code); their contents are not shown on the details page.</li> <li> Extra fields can contain a pipe ("|") character to separate them into a short label and a longer description. e.g. "N|Number of samples" or "miRNA-target|microRNA target gene and position". - On the click details page, the second part is shown on a new line and in smaller font and for - filters, only the first part is shown. + On the click details page, the second part is shown on a new line and in smaller font, and for + filters, only the first part is shown.</li> </ol> <h2>Sharing Your Data with Others</h2> <p> If you would like to share your bigBed data track with a colleague, the best solution is to save your current view as a stable <a href="hgSessionHelp.html">Genome Browser Session Link</a>. This will save the position and all settings that you made, all track visibilities, filters, highlights, etc. </p> <p> If you want to create URLs to your bigBed file programmatically from software, look at Example #6 on <a href="customTrack.html#EXAMPLE6">this page</a>. </p> <a name="extract"></a>