6f429cb567c6a0245bb1f8b98c68071739562f1b max Mon Jun 8 05:49:53 2026 -0700 query.html: fix serial comma and quote style in exon search docs no redmine Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> diff --git src/hg/htdocs/goldenPath/help/query.html src/hg/htdocs/goldenPath/help/query.html index 47f4f8e7ff2..159b56eee34 100755 --- src/hg/htdocs/goldenPath/help/query.html +++ src/hg/htdocs/goldenPath/help/query.html @@ -69,31 +69,31 @@ exon number in one of two formats:</p> <ul> <li><code>SYMBOL exon N</code> — e.g. <code>TP53 exon 5</code> or <code>NM_000546 exon 5</code></li> <li><code>SYMBOL:e.N</code> — compact notation from the <a href="https://fusions.cancervariants.org/en/latest/" target="_blank">VICC Gene Fusion Specification</a>, e.g. <code>TP53:e.5</code> or <code>NM_000546:e.5</code>. Optionally add an intronic offset: <code>SYMBOL:e.N+offset</code> navigates <em>offset</em> bases past the 3’ end of the exon (into the downstream intron), and <code>SYMBOL:e.N-offset</code> navigates <em>offset</em> bases before the 5’ start (into the upstream intron). Useful for splice site inspection: <code>BRCA2:e.10+2</code> lands 2 bp into the intron after exon 10.</li> </ul> <p> Exon numbering is 1-based and follows transcript order (exon 1 is the 5′ exon). Genes are looked up in order: MANE, GENCODE/UCSC (knownGene), all RefSeq, then historical RefSeq. To jump to a codon instead, just enter it -after the gene, e.g. "BRAF 600", use the HGVS notation (see below) or +after the gene, e.g. <code>BRAF 600</code>, use the HGVS notation (see below), or right-click any transcript in the browser and select “Zoom to codon”.</p> <h2>Sample queries</h2> <p> Below is a list of examples that might be used to query the Genome Browser. Note that not every query listed here will produce a result in every assembly. The list serves only to illustrate the different types of queries that can be performed. <table border="1"> <tr><th width="200">Query</th><th width="250">Genome Browser Response</th></tr> <tr> <td>chr7</td> <td>Displays all of chromosome 7</td></tr> <tr> <td>chr3:1-1000000</td>