c9d17a52b6b5663c7175b01f801d23198b675f7e max Fri Sep 25 12:03:55 2026 -0700 Revert all bigBed-filters for VCF changes, as Chris did that earlier already. This reverts commit 2521d696f5073ce8cee3f59f423f161fdb77d550. diff --git src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html index a03634975af..5751fefd8fa 100755 --- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html +++ src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html @@ -1226,37 +1226,30 @@
vcfDoMinAc <on/off>
sampleMetadataFile <url>
showHardyWeinberg <on/off>

Additional settings found in the "Item or region tracks" section are also available for displaying Variant Call Format tracks.

maxWindowCoverage, maxWindowToDraw -

The bigBed filter settings also work on VCF INFO fields, with the INFO key - as the field name, e.g. filter.AF 0.01:

- filter, - filterText, - filterValues, - filterLabel, - filterPriority
Example of a VCF track:


 vcfPhasedTrio - Variant Call Format Trio track settings