c9d17a52b6b5663c7175b01f801d23198b675f7e max Fri Sep 25 12:03:55 2026 -0700 Revert all bigBed-filters for VCF changes, as Chris did that earlier already. This reverts commit 2521d696f5073ce8cee3f59f423f161fdb77d550. diff --git src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html index a03634975af..5751fefd8fa 100755 --- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html +++ src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html @@ -1226,37 +1226,30 @@ <TR VALIGN=TOP><TD class="vcfDoMinAc"><A NAME="vcfDoMinAc"><IMG class='toggle detail'> <div class="format"><code class="level-new">vcfDoMinAc <on/off></code></div> </TD></TR> <TR VALIGN=TOP><TD class="sampleMetadataFile"><A NAME="sampleMetadataFile"><IMG class='toggle detail'> <div class="format"><code class="level-new">sampleMetadataFile <url></code></div> </TD></TR> <TR VALIGN=TOP><TD class="showHardyWeinberg"><A NAME="showHardyWeinberg"><IMG class='toggle detail'> <div class="format"><code class="level-new">showHardyWeinberg <on/off></code></div> </TD></TR> <TR VALIGN=TOP><TD> <P>Additional settings found in the "Item or region tracks" section are also available for displaying Variant Call Format tracks.</P> <A onclick="return jumpTo(this);" HREF="#">maxWindowCoverage</A>, <A onclick="return jumpTo(this);" HREF="#">maxWindowToDraw</A> - <P>The bigBed filter settings also work on VCF INFO fields, with the INFO key - as the field name, e.g. <code>filter.AF 0.01</code>:</P> - <A onclick="return jumpTo(this);" HREF="#">filter</A>, - <A onclick="return jumpTo(this);" HREF="#">filterText</A>, - <A onclick="return jumpTo(this);" HREF="#">filterValues</A>, - <A onclick="return jumpTo(this);" HREF="#">filterLabel</A>, - <A onclick="return jumpTo(this);" HREF="#">filterPriority</A> </DIV> </TD></TR> <TR class="examples" VALIGN=TOP><TD class="vcfTabix_example"> <IMG class='toggle detail'> <div class="format"><B>Example of a VCF track:</B></div> </TD></TR> </TABLE> <BR><BR> <A name="vcfPhasedTrio"></A> <TABLE class="settingsTable" id="vcfPhasedTrio_-_Variant_Call_Format_Track_Settings"> <THEAD><TR><TD><DIV ID="vcfPhasedTrio_intro" class="intro"></DIV></TD></TR></THEAD> <TR VALIGN=TOP><TH><IMG class='toggle oneSection'/> vcfPhasedTrio - Variant Call Format Trio track settings </TH></TR>