b7b279e5f1240419fb3a408fff5c82a998a36e76
max
  Wed Jun 3 08:17:09 2026 -0700
EVE track QA fixes: fix .as field descriptions, clarify protein count in HTML

- thickStart/thickEnd .as descriptions corrected (whole protein span, not start/stop codon)
- reserved .as description corrected (always 0, not itemRgb)
- HTML Methods section: explain that 2,951 of 3,219 proteins have released VCF scores

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/scripts/eve/eve_heatmap.as src/hg/makeDb/scripts/eve/eve_heatmap.as
index f7279941bdc..63b3bd3036e 100644
--- src/hg/makeDb/scripts/eve/eve_heatmap.as
+++ src/hg/makeDb/scripts/eve/eve_heatmap.as
@@ -1,24 +1,24 @@
 table bedHeatmapEve
 "Browser extensible data (12 fields) plus heatmap fields for EVE missense scores."
     (
     string chrom;      "Chromosome (or contig, scaffold, etc.)"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
     string name;       "Protein name (gene symbol from UniProt file name)"
     uint   score;      "Score from 0-1000 (maximum EVE score x 1000)"
     char[1] strand;    "+ or -"
-    uint thickStart;   "Start of where display should be thick (start codon)"
-    uint thickEnd;     "End of where display should be thick (stop codon)"
-    uint reserved;     "Used as itemRgb as of 2004-11-22"
+    uint thickStart;   "Same as chromStart (whole protein span)"
+    uint thickEnd;     "Same as chromEnd (whole protein span)"
+    uint reserved;     "Unused (always 0)"
     int blockCount;    "Number of amino acid positions covered (heatmap columns)"
     int[blockCount] blockSizes;   "Comma-separated list of block sizes (always 3 per codon)"
     int[blockCount] chromStarts;  "Start positions relative to chromStart"
     int _rowCount;    "Number of heatmap rows (20 standard amino acids)"
     string[_rowCount] _labels; "Row labels|Single-letter amino acid codes (A C D E F G H I K L M N P Q R S T V W Y)"
     lstring _colorBounds; "Comma-separated EVE score thresholds for color interpolation"
     lstring _colorValues; "Comma-separated colors for each threshold score"
     lstring _scoreArray; "Row-major EVE scores; empty cell = wildtype or no data"
     lstring _labelArray; "Row-major mouseover labels (wildtype, variant, EVE score, Class25 prediction)"
     lstring legend; "Legend"
     string uniprotId; "UniProt accession number"
     )