8faeb3cba60c7cb842bc17c17a57c9b53ef1b478
max
  Tue Apr 21 02:51:32 2026 -0700
ncbiCloneEndsCH1073: add NCBI CH1073 BAC library clone end placements track on danRer11, refs #35059

210,777 unique-concordant clone-insert placements from NCBI's CH1073
(RZPD-1073 / DanioKey) library clone report. Separate from the existing
bacEndPairsLift (danRer4 -> danRer11 UCSC-BLAT lift), which is left in place.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

diff --git src/hg/makeDb/scripts/ncbiCloneEndsCH1073/cloneEnds.as src/hg/makeDb/scripts/ncbiCloneEndsCH1073/cloneEnds.as
new file mode 100644
index 00000000000..6e94ea01c0b
--- /dev/null
+++ src/hg/makeDb/scripts/ncbiCloneEndsCH1073/cloneEnds.as
@@ -0,0 +1,17 @@
+table ncbiCloneEndsCH1073
+"NCBI CH1073 BAC library unique-concordant clone placements on danRer11"
+(
+string  chrom;            "Reference sequence chromosome or scaffold"
+uint    chromStart;        "Start position (0-based)"
+uint    chromEnd;          "End position"
+string  name;              "Clone name (e.g. CH1073-100A1)"
+uint    score;             "Always 0 (not provided in source)"
+char[1] strand;            "Always + (not meaningful in source)"
+uint    insertSize;        "End - start of placement, bp"
+string  concordant;        "TRUE if this placement is concordant with the reference"
+string  unique;            "TRUE if this placement is unique in the genome"
+string  assmUnit;          "NCBI assembly unit (Primary Assembly, ALT_DRER_TU_1, etc.)"
+string  oversize;          "TRUE if insertSize > 500000|Flag for likely-spurious mappings"
+string  ncbiPlacementId;   "NCBI placement ID (GFF column-9 ID)"
+string  placementMethod;   "NCBI placement method (end-seq)"
+)