18bdb7e650b738210115316787b9691f4d4c6969
max
  Fri Jul 4 05:21:50 2025 -0700
adding bionano tracks to hg19 and hg38, refs #36033

diff --git src/hg/makeDb/trackDb/human/exomeProbesets.html src/hg/makeDb/trackDb/human/exomeProbesets.html
index a2857d72837..2365d89536d 100755
--- src/hg/makeDb/trackDb/human/exomeProbesets.html
+++ src/hg/makeDb/trackDb/human/exomeProbesets.html
@@ -1,25 +1,28 @@
 <h1>Description</h1>
 <p>
 This set of tracks shows the genomic positions of <b>probes</b> and <b>targets</b> from a full 
 suite of in-solution-capture target enrichment exome kits for <b>Next Generation Sequencing (NGS)</b>
 applications. Also known as <b>exome sequencing</b> or <b>whole exome sequencing (WES)</b>, 
 this technique allows high-throughput parallel sequencing of all exons (e.g., coding regions of genes 
 which affect protein function), constituting about 1% of the human genome, or approximately 30 
 million base pairs.
 </p>
+<p>It also includes a track with the sites used by the 
+<a target=blank href="https://www.bionano.com"><b>Bionano Optical Genome Mapping system.</a>.
 <p> 
+
 The tracks are intended to show the major differences in target genomic regions between the 
 different exome capture kits from the major players in the NGS sequencing market:
 <a target=blank href="https://www.illumina.com"><b>Illumina Inc.</b></a>, 
 <a target=blank href="https://www.roche.com"><b>Roche NimbleGen Inc.</b></a>, 
 <a target=blank href="https://www.agilent.com"><b>Agilent Technologies Inc.</b></a>,
 <a target=blank href="https://en.mgi-tech.com"><b>MGI Tech</b></a>,
 <a target=blank href="https://www.twistbioscience.com"><b>Twist Bioscience</b></a>, and
 <a target=blank href="https://www.idtdna.com"><b>Integrated DNA Technologies Inc.</b></a>.
 </p>
 
 <h1>Display Conventions and Configuration</h1>
 
 <p>
 Items are shaded according to manufacturing company:
 <ul>
@@ -288,21 +291,21 @@
 <p>
 For downloading the data, the annotations are stored in bigBed files that
 can be accessed at
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/exomeProbesets/" target="_blank">
 our download directory</a>. 
 Regional or the whole genome text annotations can be obtained using our utility 
 <tt>bigBedToBed</tt>. Instructions for downloading utilities can be found
 <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>.
 </p>
 
 <h1>Credits</h1>
 
 <p> 
 Thanks to Illumina (U.S.), Roche NimbleGen, Inc. (U.S.), Agilent Technologies (U.S.), MGI Tech
 (Beijing Genomics Institute, China), Twist Bioscience (U.S.), and Integrated DNA Technologies (IDT),
-Inc. (U.S.) for making these data available and to Tiana Pereira, Pranav Muthuraman, Began Nguy
+Inc. (U.S.), and Bionano Genomics (U.S.) for making these data available and to Tiana Pereira, Pranav Muthuraman, Began Nguy
 and Anna Benet-Pages for enginering these tracks.
 </p>