44a568b95d278dc404a42e24c5877b523aa42e50
max
  Fri Mar 13 07:37:16 2026 -0700
adding a note to gnomad to make it clear that 3.1 should not be used, email from Chris

diff --git src/hg/makeDb/trackDb/human/hg38/gnomad.ra src/hg/makeDb/trackDb/human/hg38/gnomad.ra
index 847f6cf93dc..ecd00edc2f9 100644
--- src/hg/makeDb/trackDb/human/hg38/gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg38/gnomad.ra
@@ -45,32 +45,32 @@
     dataVersion Release 3.0 (October 16, 2019)
     type vcfTabix
     showHardyWeinberg on
     configureByPopup off
     maxWindowToDraw 200000
     html gnomad4.1
     bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r3.0.sites.vcf.gz
     priority 3.3
     visibility hide
     url http://gnomad.broadinstitute.org/variant/$s-$<pos>-$<ref>-$<firstAlt>?dataset=gnomad_r3&ignore=$$
     urlLabel gnomAD:
 
     track gnomadGenomesVariantsV3_1
     parent gnomadVariants
     visibility hide
-    shortLabel gnomAD v3.1
-    longLabel Genome Aggregation Database (gnomAD) Genome Variants v3.1
+    shortLabel Deprecated: gnomAD v3.1
+    longLabel Deprecated: Genome Aggregation Database (gnomAD) Genome Variants v3.1
     dataVersion Release 3.1 (October 29, 2020)
     type bigBed 9 +
     itemRgb on
     html gnomadV4.1
     bigDataUrl /gbdb/hg38/gnomAD/v3.1/variants/genomes.bb
     priority 3.2
     labelFields name,rsId
     defaultLabelFields name
     sepFields AC_afr
     filterValues.annot pLoF,missense,synonymous,other
     filterType.annot multiple
     filterValues.FILTER PASS,InbreedingCoeff,RF,AC0
     filterType.FILTER multipleListAnd
     filterValuesDefault.FILTER PASS
     filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation