93ffd483ab062d09df2743ccc0e32013e91fbd76 max Wed Apr 1 07:06:38 2026 -0700 renaming mpra supertrack to regulatory functional assays, suggested by Katie Pollard, refs #34284 diff --git src/hg/makeDb/trackDb/human/hg38/mpra.ra src/hg/makeDb/trackDb/human/hg38/regfunc.ra similarity index 80% rename from src/hg/makeDb/trackDb/human/hg38/mpra.ra rename to src/hg/makeDb/trackDb/human/hg38/regfunc.ra index 6fa524b9150..e202a4d3790 100644 --- src/hg/makeDb/trackDb/human/hg38/mpra.ra +++ src/hg/makeDb/trackDb/human/hg38/regfunc.ra @@ -1,33 +1,32 @@ -track mpra -shortLabel MPRAs -longLabel Massively Parallel Reporter Assays +track regfunc +shortLabel Regulatory functional assays +longLabel Regulatory functional assays - MPRAs group phenDis type bed 4 visibility hide superTrack on track mprabase shortLabel MPRA Base longLabel MPRAs: MPRA Base Enhancer Elements type bigBed 9 + 9 - #bigDataUrl final_authorPMID.mean_v2.bb - bigDataUrl /gbdb/hg38/mpra/mprabase/mprabase.bb + bigDataUrl /gbdb/hg38/regfunc/mprabase/mprabase.bb parent mpra visibility pack priority 1 itemRgb on mouseOver "$cell_line | $assay | Score: $raw_score | %tile: $percentile_rank | $citation" urls PMID="https://www.ncbi.nlm.nih.gov/pubmed/$$" track mpraVarDb shortLabel MPRAVarDB longLabel MPRAs: MPRAVarDB - MPRA-tested Regulatory Variant Effects - grey is non-significant parent mpra on - bigDataUrl /gbdb/hg38/mpra/mpravardb.bb + bigDataUrl /gbdb/hg38/regfunc/mpravardb/mpravardb.bb type bigBed 9 + itemRgb on visibility dense mouseOverField _mouseOverLog2FC,_mouseOverPvalue,_mouseOverFdr mouseOver Ref: $ref Alt: $alt Cell: $cellLine log2FC: $_mouseOverLog2FC p: $_mouseOverPvalue FDR: $_mouseOverFdr skipFields _mouseOverLog2FC,_mouseOverPvalue,_mouseOverFdr priority 2