6bb46ba4e8d91ab3670d354ef18d8bf5321ec9ee
max
  Thu Mar 12 07:15:29 2026 -0700
Add WebSTR short tandem repeat track under new strVar supertrack

New track with 1.7M STR loci from WebSTR EnsembleTR panel (hg38),
with allele frequency data for 5 populations from 1000 Genomes
(3,550 samples). Includes conversion script, .as schema, trackDb,
and full HTML documentation, refs #36652

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/hg38/trackDb.ra src/hg/makeDb/trackDb/human/hg38/trackDb.ra
index d80fc94c957..31dcdcfe08a 100644
--- src/hg/makeDb/trackDb/human/hg38/trackDb.ra
+++ src/hg/makeDb/trackDb/human/hg38/trackDb.ra
@@ -1,15 +1,19 @@
+include ncOrfs.ra alpha
+
+include webstr.ra alpha
+
 include barCharts.ra
 
 include hoffMap.ra
 
 include cancerExpr.ra
 
 include mane.ra
 
 include gdcCancer.ra
 
 include cortexVelmeshev.ra
 include heartCellAtlas.ra
 include kidneyStewart.ra
 include muscleDeMicheli.ra
 #include lungVieiraBraga.ra
@@ -293,30 +297,39 @@
 group x
 visibility hide
 type bed 4
 
 track chainSelf override
 longLabel $Organism Chained Self Alignments
 group rep
 priority 6
 chainColor Normalized Score
 matrixHeader A, C, G, T
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
 type chain hg38
 otherDb hg38
 chainNormScoreAvailable yes
 scoreFilter 20000
+baseColorUseSequence 2bit
+indelQueryInsert on
+indelDoubleInsert on
+showDiffBasesAllScales .
+showDiffBasesMaxZoom 100000.0
+showCdsMaxZoom 10000.0
+showCdsAllScales .
+baseColorDefault diffBases
+otherTwoBitUrl /gbdb/hg38/hg38.2bit
 
 track multiz4way
 shortLabel Cons 4-way
 longLabel 4-Way Multiz Alignment & Conservation
 group compGeno
 visibility hide
 color 0, 10, 100
 altColor 0,90,10
 type wigMaf 0.0 1.0
 maxHeightPixels 100:40:11
 # wiggle phastCons4way
 # spanList 1
 pairwiseHeight 12
 yLineOnOff Off
 # frames multiz4wayFrames