a442752cfb1738add6158966133902bdc47e69d0 max Sun May 25 14:11:39 2025 -0700 adding ucnebase to unusual conservation track, refs #35703 diff --git src/hg/makeDb/trackDb/human/hg38/unusualcons.ra src/hg/makeDb/trackDb/human/hg38/unusualcons.ra index 921797f6f38..857ad497436 100644 --- src/hg/makeDb/trackDb/human/hg38/unusualcons.ra +++ src/hg/makeDb/trackDb/human/hg38/unusualcons.ra @@ -1,29 +1,53 @@ track unusualcons compositeTrack on shortLabel Unusually Conserved longLabel Unusually Conserved Regions - Ultracons, HARs, etc. type bed group compGeno track ultras shortLabel Ultracons longLabel Ultracons: 481 Ultraconserved regions - 100% identical in human, mouse and rat, > 200bp parent unusualcons on type bigBed 4 bigDataUrl /gbdb/hg38/unusualcons/hg38.ultraConserved.bb + track ucneClusters + shortLabel UCNE Clusters + longLabel UCNEBase: 239 Cluster of UCNE elements + parent unusualcons on + type bigBed 4 + + bigDataUrl /gbdb/hg38/unusualcons/clusters.bb + url https://epd.expasy.org/ucnebase/view.php?data=cluster&entry=$$ + + track ucneChicken + shortLabel UCNE Chicken + longLabel UCNEBase: 4351 Chicken-conserved elements + parent unusualcons on + type bigBed 4 + + bigDataUrl /gbdb/hg38/unusualcons/chicken.bb + url https://epd.expasy.org/ucnebase/view.php?data=ucne&entry=$$ + + track ucneParalogs + shortLabel UCNE Paralogs + longLabel UCNEBase: 987 Paralogous elements + parent unusualcons on + type bigBed 4 + + bigDataUrl /gbdb/hg38/unusualcons/paralogs.bb + url url="https://epd.expasy.org/ucnebase/view.php?data=ucne&entry=$$" + track ultraZoo shortLabel UltraZoos longLabel UltraZoos: 4552 Ultraconserved regions in Zoonomia alignment - 100% identical in 235 species, >20bp parent unusualcons on type bigBed 4 + bigDataUrl /gbdb/hg38/unusualcons/zooUCEs.bigBed track har2649 shortLabel HARs longLabel HARs: 2649 Human Accelerated Regions (HARs) merged from various publications by the Pollard Lab parent unusualcons on type bigBed 4 + bigDataUrl /gbdb/hg38/unusualcons/nchaes_merged_hg38.bb track hars312