989d891c0c0a500e584d55f2f368b52f2abe5f1d max Tue Apr 21 06:25:48 2026 -0700 kwanhoSv: flag as preliminary, ask users to contact authors Mark the Kim et al. 2026 PD brain long-read SV subtrack as preliminary in its shortLabel and longLabel, and add a prominent warning banner at the top of the description page telling users to contact the authors (ASAP / Kim lab) before using the data, since the callset will be updated before publication. refs #36258 diff --git src/hg/makeDb/trackDb/human/kwanhoSv.html src/hg/makeDb/trackDb/human/kwanhoSv.html index d888c3a6f52..4c641c20175 100644 --- src/hg/makeDb/trackDb/human/kwanhoSv.html +++ src/hg/makeDb/trackDb/human/kwanhoSv.html @@ -1,16 +1,25 @@ <h2>Description</h2> + +<p style="background-color:#fff3cd; border-left:4px solid #856404; padding:10px 14px; margin-bottom:18px;"> +<b>Preliminary data.</b> This callset is a pre-publication release that will be +updated before the final publication. Before using these data for analysis or +in a paper, please contact the authors at the Aligning Science Across +Parkinson's (ASAP) consortium / the Kim lab to check for the latest version +and for guidance on appropriate use. +</p> + <p> This track shows structural variants (SVs) identified by PacBio HiFi long-read whole-genome sequencing of 100 post-mortem human brain samples, split across three diagnostic groups: Parkinson's disease (PD), incidental Lewy body disease (ILBD) and healthy controls (HC). The high-confidence catalog contains 74,552 SVs: 34,056 insertions, 29,545 deletions, 9,707 duplications and 1,244 inversions. </p> <p> The dataset accompanies Kim et al. (2026), which combines the long-read SV catalog with single-nucleus RNA-seq from the same donors to identify SVs associated with cell-type-specific gene expression, including variants near genes nominated as causal targets of PD GWAS loci. </p>