65091fe6f6487c23d650a144e947fc1c582d3f40
max
  Tue Apr 21 02:16:16 2026 -0700
abelSv: move under lrSv supertrack as short-read comparison subtrack

Move the Abel et al. 2020 CCDG 17,795-genome SV callset from a
top-level hg38 track to a subtrack of the lrSv supertrack (parallel
to onekg3202Sr) and relabel shortLabel/longLabel to flag Illumina
short-read provenance. The same bigBed is now visible on hg38 in
the long-read SV browsing context. Also:

- Clarify abelSv.html variant counts: 738,624 upstream unique SVs
across both callsets, 737,998 after B37->hg38 liftOver (626
unmapped). B38=458,106, B37lift=279,892.
- lrSv.html: fix triple-slash https:/// in the Ebert et al. Science
reference URL.
- bigBed.html: add closing </li> on the extra-fields pipe-separator
bullet and tighten a comma in the same sentence.

refs #36258, refs #37376

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index e2d16939843..1eec6373f17 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -415,31 +415,31 @@
 Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA,
 Richmond PA, De Coster W <em>et al</em>.
 <a href="http://genome.cshlp.org/lookup/pmidlookup?view=long&amp;pmid=39358015" target="_blank">
 High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive
 catalog of human genetic variation</a>.
 <em>Genome Res</em>. 2024 Nov 20;34(11):2061-2073.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/39358015" target="_blank">39358015</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11610458/" target="_blank">PMC11610458</a>
 </p>
 
 
 
 <p>
 Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W,
 Serra Mari R <em>et al</em>.
-<a href="https:///www.science.org/doi/10.1126/science.abf7117" target="_blank">
+<a href="https://www.science.org/doi/10.1126/science.abf7117" target="_blank">
 Haplotype-resolved diverse human genomes and integrated analysis of structural variation</a>.
 <em>Science</em>. 2021 Apr 2;372(6537).
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/33632895" target="_blank">33632895</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8026704/" target="_blank">PMC8026704</a>
 </p>
 
 
 
 <p>
 Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R,
 Nagulapalli K <em>et al</em>.
 <a href="https://linkinghub.elsevier.com/retrieve/pii/S0092-8674(22)00991-6" target="_blank">
 High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602
 trios</a>.
 <em>Cell</em>. 2022 Sep 1;185(18):3426-3440.e19.