3870b9e5e1b3fc67b0638fa77f6644bf5f133c9f
max
  Mon Jul 20 10:52:55 2026 -0700
lrSv: relabel lrSv1kLin and gustafsonSv, write lrSv1kLin description

Per Eichler lab request: relabel lrSv1kLin to 'Structural Variants from 1218
1KG individuals (HiFi, ONT & assembly)' and write its description page (drawn
from HPRC year 2, HGSVC3, Vienna 1KG-ONT and UW 1KG-ONT). Relabel gustafsonSv
as the University of Washington 1KG-ONT effort. Track names unchanged; no data
rebuilt, counts kept honest at the current 100-sample Gustafson data. refs #36258

diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index ee7ba629c4a..1ca485c18c5 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -81,32 +81,32 @@
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.AC 0:1816
     filterByRange.AC on
     filterLabel.AC Allele Count
     skipEmptyFields on
     dataVersion 1.1
     priority 2
 
     track gustafsonSv
     parent longReadVariants
     bigDataUrl /gbdb/$D/lrSv/gustafson.bb
-    shortLabel 1KG ONT 100 SVs
-    longLabel Structural Variants from 100 1000 Genomes ONT Samples (Gustafson et al. 2024)
+    shortLabel 1KG ONT UW 100 SVs
+    longLabel Structural Variants from University of Washington 1000 Genomes ONT sequencing (100 samples, Gustafson et al. 2024)
     type bigBed 9 +
     itemRgb on
     visibility hide
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC<br><b>Samples</b>: $sampleCount
     filterValues.svType DEL,INS,DUP,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:98289
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:25094
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:200
     filterByRange.AC on
@@ -593,32 +593,32 @@
     filter.nGwas 0:11
     filterByRange.nGwas on
     filterLabel.nGwas UK Biobank GWAS Hit Count
     filter.r2Ukb 0:1
     filterByRange.r2Ukb on
     filterLimits.r2Ukb 0:1
     filterLabel.r2Ukb Imputation r2 (UK Biobank)
     skipEmptyFields on
 
     # NOT FOR RELEASE: data received from Eichler lab via email, not yet published.
     # Do not add to lrSvAll merged track until a preprint or paper is available.
     track lrSv1kLin
     parent longReadVariants
     release alpha
     bigDataUrl /gbdb/$D/lrSv/lin1218.bb
-    shortLabel 1KG Linear 1218 SVs
-    longLabel Structural Variants from 1,218 Individuals (1000 Genomes, Linear Long-read)
+    shortLabel 1KG LRS 1218 SVs
+    longLabel Structural Variants from 1218 1KG individuals (HiFi, ONT & assembly)
     type bigBed 9 +
     itemRgb on
     visibility hide
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC/$AN<br><b>AF</b>: $AF<br><b>AF (African)</b>: $afAfr<br><b>AF (European)</b>: $afEur<br><b>Samples</b>: $NS
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99565
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:99968
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.AC 0:2436
     filterByRange.AC on