dc1e0e76dbe49861bd0ebe8db64e27f587737794 max Mon Mar 30 15:40:03 2026 -0700 adding two more phased variants tracks, refs #37306 diff --git src/hg/makeDb/trackDb/human/phasedVars.ra src/hg/makeDb/trackDb/human/phasedVars.ra index 316a18e02da..3cfd8844902 100644 --- src/hg/makeDb/trackDb/human/phasedVars.ra +++ src/hg/makeDb/trackDb/human/phasedVars.ra @@ -41,15 +41,37 @@ dataVersion 2016-12-07 public (hg38 lift) priority 4 html phasedVars.html track hgdp1k shortLabel gnomAD HGDP+1000G 4k WGS longLabel Phased Variants: gnomAD HGDP + 1000 genomes callset - 4094 whole genomes, 80 populations type vcfTabix parent phasedVars on bigDataUrl /gbdb/$D/phasedVars/hgdp1k/gnomad.genomes.v3.1.2.hgdp_tgp.vcf.gz visibility pack dataVersion v 3.1.2 priority 5 html phasedVars.html + track han945SvVcf + parent phasedVars + bigDataUrl /gbdb/$D/phasedVars/han945genotypes.vcf.gz + shortLabel SVs from 945 Han Chinese + longLabel Phased Variants: Structural variants from 945 Han Chinese SVs + type vcfTabix + visibility dense + release alpha + priority 10 + + track lrSv1kgOntPhased + parent phasedVars + bigDataUrl /gbdb/$D/phasedVars/1kgOntPhased.vcf.gz + shortLabel SVs from 1000G ONT + longLabel Phased Variants: Structural variants from 1,019 diverse humans (1000 Genomes Vienna ONT, shapeit5) + type vcfTabix + visibility dense + sampleColorFile Superpopulation=/gbdb/$D/phasedVars/1kgOntPhased.superpopColors.txt + sampleMetadataFile /gbdb/$D/phasedVars/1kgOntPhased.sampleMeta.txt + release alpha + priority 11 +