aaa2d4e074608d3e07ecf7d7a7e35cfa96b0a06d max Tue Apr 21 08:29:35 2026 -0700 tommoJpSv: fix broken jMorp download link The previous dataset-specific URL (tommo-jsv1-20211208-af) returned an error. Point to the general jMorp downloads page instead, where users can find the current ToMMo SV callset. refs #36258 diff --git src/hg/makeDb/trackDb/human/tommoJpSv.html src/hg/makeDb/trackDb/human/tommoJpSv.html index bf20054adf7..10015b98804 100644 --- src/hg/makeDb/trackDb/human/tommoJpSv.html +++ src/hg/makeDb/trackDb/human/tommoJpSv.html @@ -42,32 +42,32 @@

Methods

Oxford Nanopore sequencing was performed on genomic DNA extracted from activated T lymphocytes of 333 individuals (111 trios) from the Tohoku Medical Megabank (ToMMo) cohort. SV calling was performed with Sniffles on each sample, and calls were merged across individuals with SURVIVOR v1.0.6 using a maximum distance of 1 kbp. Allele frequencies were computed from 222 unrelated parents (excluding offspring to avoid double-counting). Mendelian error rates were calculated by checking transmission consistency within each trio family.

Data Access

Source data is available from the -jMorp data portal (ToMMo Japanese Multi Omics Reference Panel). +jMorp downloads page (ToMMo Japanese Multi Omics Reference Panel).

Credits

Thanks to the Tohoku Medical Megabank Organization for making their structural variant calls publicly available through the jMorp data portal.

References

Otsuki A, Okamura Y, Ishida N, Tadaka S, Takayama J, Kumada K, Kawashima J, Taguchi K, Minegishi N, Kuriyama S et al.