66c51e29423da24a7144c7ba99a4cc2ebc96b32c
max
  Mon Sep 28 13:54:36 2026 -0700
varFreqs: combined tracks rebuilt with SFARI SPARK 45k WGS (without its NonHumanIns insertions); add its filter blocks, affected label now ~150,000 individuals, refs #38424

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 05ffd81c3c3..7febc2d575e 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -1,27 +1,27 @@
 track varFreqs
 shortLabel SNV Frequencies
 longLabel SNV Frequencies from various cohorts or national projects
 group varRep
 type bed 12
 visibility hide
 superTrack on
 pennantIcon New red ../goldenPath/newsarch.html#070126 "Released Jul. 1, 2026"
 
         track varFreqsAffected
         shortLabel Disease cohorts
-        longLabel SNV Frequencies: variants in ~130,000 affected or case individuals (autism, schizophrenia, rare disease cohorts)
+        longLabel SNV Frequencies: variants in ~150,000 affected or case individuals (autism, schizophrenia, rare disease cohorts)
         type bigBed 9 +
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_affected/varFreqsAffected.bb
         tableBrowser off
         visibility pack
         itemRgb on
         maxWindowToDraw 5000000
         priority 0.11
         mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Affected AF:</b> ${affectedAF}<br><b>Affected AC/AN:</b> ${affectedAC} / ${affectedAN}<br><b>Affected cohorts:</b> ${affectedCohorts}<br><b>Top affected by AF:</b> ${topAffectedSources}<br><b>Background AF:</b> ${backgroundAF}
         filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK iWGS v1.1 Pilot,SPARK45k|SFARI SPARK 45k WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
         filterType.affectedCohorts multipleListOr
         filterLabel.affectedCohorts Affected/case cohort
         filterValues.backgroundSources AllOfUs|AllOfUs,SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK iWGS v1.1 Pilot,SPARK45k|SFARI SPARK 45k WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,NPM|NPM Singapore,KOVA|KOVA Korea,ToMMo|ToMMo Japan,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA,CoLoRSdb|CoLoRSdb PacBio LR,SVatalog|SVatalog 101 10XG SR,Tishkoff180|Tishkoff 180 African WGS,WBBC|WBBC China,ChinaMAP|China ChinaMAP,GenomeIndia|GenomeIndia 9.7k WGS,GoNL|GoNL Netherlands ~13x SR,HostSeq|HostSeq Canada
         filterType.backgroundSources multipleListOr
         filterLabel.backgroundSources Background source (population or unaffected)
@@ -73,33 +73,37 @@
         # Affected/case membership flag
         filterByRange.inAffected on
         filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no)
         filter.inAffected 0:1
         filterLimits.inAffected 0:1
         # Per-database AF filters (commented out: re-enable as needed)
         # filterByRange.AllOfUsAF on
         # filterLabel.AllOfUsAF AllOfUs AF
         # filter.AllOfUsAF 0:1
         # filterLimits.AllOfUsAF 0:1
         # filterByRange.SPARKAF on
         # filterLabel.SPARKAF SFARI SPARK WES AF
         # filter.SPARKAF 0:1
         # filterLimits.SPARKAF 0:1
         # filterByRange.SFARI_WGSAF on
-        # filterLabel.SFARI_WGSAF SFARI SPARK WGS AF
+        # filterLabel.SFARI_WGSAF SFARI SPARK iWGS v1.1 Pilot AF
         # filter.SFARI_WGSAF 0:1
         # filterLimits.SFARI_WGSAF 0:1
+        # filterByRange.SPARK45kAF on
+        # filterLabel.SPARK45kAF SFARI SPARK 45k WGS AF
+        # filter.SPARK45kAF 0:1
+        # filterLimits.SPARK45kAF 0:1
         # filterByRange.GenomeAsiaAF on
         # filterLabel.GenomeAsiaAF GenomeAsia SNVs AF
         # filter.GenomeAsiaAF 0:1
         # filterLimits.GenomeAsiaAF 0:1
         # filterByRange.GenomeAsiaIndelAF on
         # filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF
         # filter.GenomeAsiaIndelAF 0:1
         # filterLimits.GenomeAsiaIndelAF 0:1
         # filterByRange.NPMAF on
         # filterLabel.NPMAF NPM Singapore AF
         # filter.NPMAF 0:1
         # filterLimits.NPMAF 0:1
         # filterByRange.KOVAAF on
         # filterLabel.KOVAAF KOVA Korea AF
         # filter.KOVAAF 0:1
@@ -190,33 +194,37 @@
         # filterLimits.GoNLAF 0:1
         # filterByRange.HostSeqAF on
         # filterLabel.HostSeqAF HostSeq Canada AF
         # filter.HostSeqAF 0:1
         # filterLimits.HostSeqAF 0:1
         # Per-database AC filters (commented out: re-enable as needed)
         # filterByRange.AllOfUsAC on
         # filterLabel.AllOfUsAC AllOfUs AC
         # filter.AllOfUsAC 0:2000000
         # filterLimits.AllOfUsAC 0:2000000
         # filterByRange.SPARKAC on
         # filterLabel.SPARKAC SFARI SPARK WES AC
         # filter.SPARKAC 0:2000000
         # filterLimits.SPARKAC 0:2000000
         # filterByRange.SFARI_WGSAC on
-        # filterLabel.SFARI_WGSAC SFARI SPARK WGS AC
+        # filterLabel.SFARI_WGSAC SFARI SPARK iWGS v1.1 Pilot AC
         # filter.SFARI_WGSAC 0:2000000
         # filterLimits.SFARI_WGSAC 0:2000000
+        # filterByRange.SPARK45kAC on
+        # filterLabel.SPARK45kAC SFARI SPARK 45k WGS AC
+        # filter.SPARK45kAC 0:2000000
+        # filterLimits.SPARK45kAC 0:2000000
         # filterByRange.GenomeAsiaAC on
         # filterLabel.GenomeAsiaAC GenomeAsia SNVs AC
         # filter.GenomeAsiaAC 0:2000000
         # filterLimits.GenomeAsiaAC 0:2000000
         # filterByRange.GenomeAsiaIndelAC on
         # filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC
         # filter.GenomeAsiaIndelAC 0:2000000
         # filterLimits.GenomeAsiaIndelAC 0:2000000
         # filterByRange.NPMAC on
         # filterLabel.NPMAC NPM Singapore AC
         # filter.NPMAC 0:2000000
         # filterLimits.NPMAC 0:2000000
         # filterByRange.KOVAAC on
         # filterLabel.KOVAAC KOVA Korea AC
         # filter.KOVAAC 0:2000000
@@ -364,47 +372,64 @@
         # filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF
         # filter.SPARKAF_AUT 0:1
         # filterLimits.SPARKAF_AUT 0:1
         # filterByRange.SPARKAF_NON_AUT on
         # filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF
         # filter.SPARKAF_NON_AUT 0:1
         # filterLimits.SPARKAF_NON_AUT 0:1
         # filterByRange.SPARKAC_AUT on
         # filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC
         # filter.SPARKAC_AUT 0:2000000
         # filterLimits.SPARKAC_AUT 0:2000000
         # filterByRange.SPARKAC_NON_AUT on
         # filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC
         # filter.SPARKAC_NON_AUT 0:2000000
         # filterLimits.SPARKAC_NON_AUT 0:2000000
-        # SFARI SPARK WGS populations
+        # SFARI SPARK iWGS v1.1 Pilot populations
         # filterByRange.SFARI_WGSAF_AUT on
-        # filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF
+        # filterLabel.SFARI_WGSAF_AUT SFARI SPARK iWGS v1.1 Pilot ASD proband AF
         # filter.SFARI_WGSAF_AUT 0:1
         # filterLimits.SFARI_WGSAF_AUT 0:1
         # filterByRange.SFARI_WGSAF_NON_AUT on
-        # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF
+        # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK iWGS v1.1 Pilot Non-ASD family AF
         # filter.SFARI_WGSAF_NON_AUT 0:1
         # filterLimits.SFARI_WGSAF_NON_AUT 0:1
         # filterByRange.SFARI_WGSAC_AUT on
-        # filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC
+        # filterLabel.SFARI_WGSAC_AUT SFARI SPARK iWGS v1.1 Pilot ASD proband AC
         # filter.SFARI_WGSAC_AUT 0:2000000
         # filterLimits.SFARI_WGSAC_AUT 0:2000000
         # filterByRange.SFARI_WGSAC_NON_AUT on
-        # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC
+        # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK iWGS v1.1 Pilot Non-ASD family AC
         # filter.SFARI_WGSAC_NON_AUT 0:2000000
         # filterLimits.SFARI_WGSAC_NON_AUT 0:2000000
+        # SFARI SPARK 45k WGS populations
+        # filterByRange.SPARK45kAF_AUT on
+        # filterLabel.SPARK45kAF_AUT SFARI SPARK 45k WGS ASD proband AF
+        # filter.SPARK45kAF_AUT 0:1
+        # filterLimits.SPARK45kAF_AUT 0:1
+        # filterByRange.SPARK45kAF_NON_AUT on
+        # filterLabel.SPARK45kAF_NON_AUT SFARI SPARK 45k WGS Non-ASD family AF
+        # filter.SPARK45kAF_NON_AUT 0:1
+        # filterLimits.SPARK45kAF_NON_AUT 0:1
+        # filterByRange.SPARK45kAC_AUT on
+        # filterLabel.SPARK45kAC_AUT SFARI SPARK 45k WGS ASD proband AC
+        # filter.SPARK45kAC_AUT 0:2000000
+        # filterLimits.SPARK45kAC_AUT 0:2000000
+        # filterByRange.SPARK45kAC_NON_AUT on
+        # filterLabel.SPARK45kAC_NON_AUT SFARI SPARK 45k WGS Non-ASD family AC
+        # filter.SPARK45kAC_NON_AUT 0:2000000
+        # filterLimits.SPARK45kAC_NON_AUT 0:2000000
         # GenomeAsia SNVs populations
         # filterByRange.GenomeAsiaAF_NEA on
         # filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF
         # filter.GenomeAsiaAF_NEA 0:1
         # filterLimits.GenomeAsiaAF_NEA 0:1
         # filterByRange.GenomeAsiaAF_SEA on
         # filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF
         # filter.GenomeAsiaAF_SEA 0:1
         # filterLimits.GenomeAsiaAF_SEA 0:1
         # filterByRange.GenomeAsiaAF_SAS on
         # filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF
         # filter.GenomeAsiaAF_SAS 0:1
         # filterLimits.GenomeAsiaAF_SAS 0:1
         # filterByRange.GenomeAsiaAF_OCE on
         # filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF
@@ -699,33 +724,37 @@
         # Affected/case membership flag
         filterByRange.inAffected on
         filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no)
         filter.inAffected 0:1
         filterLimits.inAffected 0:1
         # Per-database AF filters (commented out: re-enable as needed)
         # filterByRange.AllOfUsAF on
         # filterLabel.AllOfUsAF AllOfUs AF
         # filter.AllOfUsAF 0:1
         # filterLimits.AllOfUsAF 0:1
         # filterByRange.SPARKAF on
         # filterLabel.SPARKAF SFARI SPARK WES AF
         # filter.SPARKAF 0:1
         # filterLimits.SPARKAF 0:1
         # filterByRange.SFARI_WGSAF on
-        # filterLabel.SFARI_WGSAF SFARI SPARK WGS AF
+        # filterLabel.SFARI_WGSAF SFARI SPARK iWGS v1.1 Pilot AF
         # filter.SFARI_WGSAF 0:1
         # filterLimits.SFARI_WGSAF 0:1
+        # filterByRange.SPARK45kAF on
+        # filterLabel.SPARK45kAF SFARI SPARK 45k WGS AF
+        # filter.SPARK45kAF 0:1
+        # filterLimits.SPARK45kAF 0:1
         # filterByRange.GenomeAsiaAF on
         # filterLabel.GenomeAsiaAF GenomeAsia SNVs AF
         # filter.GenomeAsiaAF 0:1
         # filterLimits.GenomeAsiaAF 0:1
         # filterByRange.GenomeAsiaIndelAF on
         # filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF
         # filter.GenomeAsiaIndelAF 0:1
         # filterLimits.GenomeAsiaIndelAF 0:1
         # filterByRange.NPMAF on
         # filterLabel.NPMAF NPM Singapore AF
         # filter.NPMAF 0:1
         # filterLimits.NPMAF 0:1
         # filterByRange.KOVAAF on
         # filterLabel.KOVAAF KOVA Korea AF
         # filter.KOVAAF 0:1
@@ -816,33 +845,37 @@
         # filterLimits.GoNLAF 0:1
         # filterByRange.HostSeqAF on
         # filterLabel.HostSeqAF HostSeq Canada AF
         # filter.HostSeqAF 0:1
         # filterLimits.HostSeqAF 0:1
         # Per-database AC filters (commented out: re-enable as needed)
         # filterByRange.AllOfUsAC on
         # filterLabel.AllOfUsAC AllOfUs AC
         # filter.AllOfUsAC 0:2000000
         # filterLimits.AllOfUsAC 0:2000000
         # filterByRange.SPARKAC on
         # filterLabel.SPARKAC SFARI SPARK WES AC
         # filter.SPARKAC 0:2000000
         # filterLimits.SPARKAC 0:2000000
         # filterByRange.SFARI_WGSAC on
-        # filterLabel.SFARI_WGSAC SFARI SPARK WGS AC
+        # filterLabel.SFARI_WGSAC SFARI SPARK iWGS v1.1 Pilot AC
         # filter.SFARI_WGSAC 0:2000000
         # filterLimits.SFARI_WGSAC 0:2000000
+        # filterByRange.SPARK45kAC on
+        # filterLabel.SPARK45kAC SFARI SPARK 45k WGS AC
+        # filter.SPARK45kAC 0:2000000
+        # filterLimits.SPARK45kAC 0:2000000
         # filterByRange.GenomeAsiaAC on
         # filterLabel.GenomeAsiaAC GenomeAsia SNVs AC
         # filter.GenomeAsiaAC 0:2000000
         # filterLimits.GenomeAsiaAC 0:2000000
         # filterByRange.GenomeAsiaIndelAC on
         # filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC
         # filter.GenomeAsiaIndelAC 0:2000000
         # filterLimits.GenomeAsiaIndelAC 0:2000000
         # filterByRange.NPMAC on
         # filterLabel.NPMAC NPM Singapore AC
         # filter.NPMAC 0:2000000
         # filterLimits.NPMAC 0:2000000
         # filterByRange.KOVAAC on
         # filterLabel.KOVAAC KOVA Korea AC
         # filter.KOVAAC 0:2000000
@@ -990,47 +1023,64 @@
         # filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF
         # filter.SPARKAF_AUT 0:1
         # filterLimits.SPARKAF_AUT 0:1
         # filterByRange.SPARKAF_NON_AUT on
         # filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF
         # filter.SPARKAF_NON_AUT 0:1
         # filterLimits.SPARKAF_NON_AUT 0:1
         # filterByRange.SPARKAC_AUT on
         # filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC
         # filter.SPARKAC_AUT 0:2000000
         # filterLimits.SPARKAC_AUT 0:2000000
         # filterByRange.SPARKAC_NON_AUT on
         # filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC
         # filter.SPARKAC_NON_AUT 0:2000000
         # filterLimits.SPARKAC_NON_AUT 0:2000000
-        # SFARI SPARK WGS populations
+        # SFARI SPARK iWGS v1.1 Pilot populations
         # filterByRange.SFARI_WGSAF_AUT on
-        # filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF
+        # filterLabel.SFARI_WGSAF_AUT SFARI SPARK iWGS v1.1 Pilot ASD proband AF
         # filter.SFARI_WGSAF_AUT 0:1
         # filterLimits.SFARI_WGSAF_AUT 0:1
         # filterByRange.SFARI_WGSAF_NON_AUT on
-        # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF
+        # filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK iWGS v1.1 Pilot Non-ASD family AF
         # filter.SFARI_WGSAF_NON_AUT 0:1
         # filterLimits.SFARI_WGSAF_NON_AUT 0:1
         # filterByRange.SFARI_WGSAC_AUT on
-        # filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC
+        # filterLabel.SFARI_WGSAC_AUT SFARI SPARK iWGS v1.1 Pilot ASD proband AC
         # filter.SFARI_WGSAC_AUT 0:2000000
         # filterLimits.SFARI_WGSAC_AUT 0:2000000
         # filterByRange.SFARI_WGSAC_NON_AUT on
-        # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC
+        # filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK iWGS v1.1 Pilot Non-ASD family AC
         # filter.SFARI_WGSAC_NON_AUT 0:2000000
         # filterLimits.SFARI_WGSAC_NON_AUT 0:2000000
+        # SFARI SPARK 45k WGS populations
+        # filterByRange.SPARK45kAF_AUT on
+        # filterLabel.SPARK45kAF_AUT SFARI SPARK 45k WGS ASD proband AF
+        # filter.SPARK45kAF_AUT 0:1
+        # filterLimits.SPARK45kAF_AUT 0:1
+        # filterByRange.SPARK45kAF_NON_AUT on
+        # filterLabel.SPARK45kAF_NON_AUT SFARI SPARK 45k WGS Non-ASD family AF
+        # filter.SPARK45kAF_NON_AUT 0:1
+        # filterLimits.SPARK45kAF_NON_AUT 0:1
+        # filterByRange.SPARK45kAC_AUT on
+        # filterLabel.SPARK45kAC_AUT SFARI SPARK 45k WGS ASD proband AC
+        # filter.SPARK45kAC_AUT 0:2000000
+        # filterLimits.SPARK45kAC_AUT 0:2000000
+        # filterByRange.SPARK45kAC_NON_AUT on
+        # filterLabel.SPARK45kAC_NON_AUT SFARI SPARK 45k WGS Non-ASD family AC
+        # filter.SPARK45kAC_NON_AUT 0:2000000
+        # filterLimits.SPARK45kAC_NON_AUT 0:2000000
         # GenomeAsia SNVs populations
         # filterByRange.GenomeAsiaAF_NEA on
         # filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF
         # filter.GenomeAsiaAF_NEA 0:1
         # filterLimits.GenomeAsiaAF_NEA 0:1
         # filterByRange.GenomeAsiaAF_SEA on
         # filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF
         # filter.GenomeAsiaAF_SEA 0:1
         # filterLimits.GenomeAsiaAF_SEA 0:1
         # filterByRange.GenomeAsiaAF_SAS on
         # filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF
         # filter.GenomeAsiaAF_SAS 0:1
         # filterLimits.GenomeAsiaAF_SAS 0:1
         # filterByRange.GenomeAsiaAF_OCE on
         # filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF