85a3ec13e80a0e61f16e691afb878956e0483892
max
  Fri Nov 28 08:53:18 2025 -0800
adding Finnland to var freqs track, refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 2a2d01eb60a..e534a0d9fdd 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -157,30 +157,42 @@
              parent ALFA on
              shortLabel NCBI ALFA: Latin American 2
              bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA_LEN.bb
              type bigBed 9 + .
              url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
              urlLabel NCBI Variation Page
 
              track ALFA_OTR
              parent ALFA on
              shortLabel NCBI ALFA: Other
              bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA_OTR.bb
              type bigBed 9 + .
              url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
              urlLabel NCBI Variation Page
 
+        track finngen
+        parent varFreqs on
+        visibility pack
+        itemRgb on
+        type vcfTabix
+        shortLabel Finngen
+        longLabel Variant Frequencies: Finnland Finngen - 500k samples, arrays, imputation used 8.5k WGS
+        priority 4.5
+        bigDataUrl /gbdb/$D/varFreqs/finngen/finnge_R12_annotated_variants_v1.vcf.gz
+        dataVersion R12
+        tableBrowser off
+
         track gasp
         shortLabel GenomeAsia Pilot Subs 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Substitutions
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz
         visibility pack
 
         track gaspIndel
         shortLabel GenomeAsia Pilot Indels 1.7k WGS
         longLabel Variant Frequencies: GenomeAsia Pilot - Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/All.indels.annot.cont_withmaf.vcf.gz
         visibility pack
@@ -204,20 +216,20 @@
         track kova
         shortLabel Korea KOVA 1.9k WGS+3.5k WES
         longLabel Variant Frequencies: KOVA Korea - 5305 samples, 1.9k WGS+3.5k WES
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/kova/kova.v7.vcf.gz
         visibility pack
         tableBrowser off
         dataVersion V7
 
         track npm
         shortLabel Singapore NPM 9.7k WGS
         longLabel Variant Frequencies: NPM Singapore - 9,770 samples
         type vcfTabix
         parent varFreqs on
-        bigDataUrl /gbdb/hg38/varFreqs/npm/SG10K_Health_r5.3.2.sites.vcf.bgz
+        bigDataUrl /gbdb/$D/varFreqs/npm/SG10K_Health_r5.3.2.sites.vcf.bgz
         visibility pack
         tableBrowser off
         dataVersion r5.3.2