dfe4ce8ecd6ca71b2bc90b98b4f4ac73fad0c9eb max Wed Jun 3 06:47:31 2026 -0700 EVE track QA fixes: longLabel sentence case, dataVersion, relatedTracks cross-links Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> diff --git src/hg/makeDb/trackDb/relatedTracks.ra src/hg/makeDb/trackDb/relatedTracks.ra index ec59d8759e6..f0ebaa52f3f 100644 --- src/hg/makeDb/trackDb/relatedTracks.ra +++ src/hg/makeDb/trackDb/relatedTracks.ra @@ -96,30 +96,40 @@ # hg38 long-read SV supertrack cross-links to other SV resources: hg38 lrSv gnomadStructuralVariants Short-read structural variants from gnomAD v4.1 hg38 gnomadStructuralVariants lrSv Long-read structural variants across multiple cohorts hg38 lrSv dbVarSv NCBI dbVar structural variants (short-read and long-read, germline and clinical) hg38 dbVarSv lrSv Long-read structural variants across multiple cohorts hg38 lrSv dgvPlus Database of Genomic Variants (DGV) structural variation catalog hg38 dgvPlus lrSv Long-read structural variants across multiple cohorts hg38 lrSv giabSv Genome in a Bottle high-confidence SV benchmark callsets hg38 giabSv lrSv Long-read structural variants across multiple cohorts hg38 lrSv mei Polymorphic Mobile Element Insertions (Alu, L1, SVA, HERVK, snRNA) from HGSVC3 long-read assemblies hg38 mei lrSv Long-read structural variants across multiple cohorts (parent SV callsets for the HGSVC3 MEI track) hs1 lrSv mei Polymorphic Mobile Element Insertions (Alu, L1, SVA, HERVK, snRNA) from HGSVC3 long-read assemblies hs1 mei lrSv Long-read structural variants across multiple cohorts (parent SV callsets for the HGSVC3 MEI track) +# EVE cross-links: +hg38 eve alphaMissense AlphaMissense, a similar deep-learning missense pathogenicity predictor +hg38 alphaMissense eve EVE, a missense pathogenicity predictor trained on evolutionary sequence variation +hg38 eve primateAi PrimateAI-3D, a similar deep-learning missense pathogenicity predictor using primate variation +hg38 primateAi eve EVE, a missense pathogenicity predictor trained on evolutionary sequence variation +hg38 eve revel REVEL, an ensemble missense pathogenicity score built from multiple predictors +hg38 revel eve EVE, a missense pathogenicity predictor trained on evolutionary sequence variation +hg38 eve clinPred ClinPred, an ensemble missense pathogenicity predictor that incorporates gnomAD allele frequency +hg38 clinPred eve EVE, a missense pathogenicity predictor trained on evolutionary sequence variation + # PrimateAI-3D cross-links: hg38 primateAi alphaMissense AlphaMissense, a similar deep-learning missense pathogenicity predictor hg38 alphaMissense primateAi PrimateAI-3D, a similar deep-learning missense pathogenicity predictor using primate variation hg38 primateAi revel REVEL, an ensemble missense pathogenicity score built from multiple predictors hg38 revel primateAi PrimateAI-3D, a missense pathogenicity predictor using primate variation and 3D protein structure hg19 primateAi revel REVEL, an ensemble missense pathogenicity score built from multiple predictors hg19 revel primateAi PrimateAI-3D, a missense pathogenicity predictor using primate variation and 3D protein structure # ClinPred cross-links: hg38 clinPred revel REVEL, an ensemble missense pathogenicity score using a similar machine-learning approach hg38 revel clinPred ClinPred, an ensemble missense pathogenicity predictor that incorporates gnomAD allele frequency hg38 clinPred caddSuper CADD, a similar deleteriousness score hg38 caddSuper clinPred ClinPred, a missense-only pathogenicity predictor hg38 clinPred primateAi PrimateAI-3D, a missense pathogenicity predictor using primate variation