76eabae1c28bb07c02af6a12fa9222c348b039d9 max Sun Sep 6 07:02:29 2026 -0700 DANIO-CODE: open each subtrack description with the sentence saying that the track is part of the DANIO-CODE container, linking to its hgTrackUi page, instead of burying it in a paragraph at the end of the description. refs #38265 diff --git src/hg/makeDb/trackDb/zebrafish/danRer11/dcConsensus_promoters.html src/hg/makeDb/trackDb/zebrafish/danRer11/dcConsensus_promoters.html index 2ead03d6796..4045c4788b8 100644 --- src/hg/makeDb/trackDb/zebrafish/danRer11/dcConsensus_promoters.html +++ src/hg/makeDb/trackDb/zebrafish/danRer11/dcConsensus_promoters.html @@ -1,37 +1,34 @@
+This track is part of the DANIO-CODE track collection. A promoter is the region at which transcription of a gene begins. In vertebrates a promoter rarely uses a single start base; it fires from a cluster of neighboring positions, and which position dominates can change between developmental stages. CAGE sequences the first bases of capped RNAs and therefore measures these start positions directly.
This track shows 28,142 consensus promoters, called by combining the CAGE tag clusters of all DANIO-CODE samples into one set that is not tied to a single stage. It is intended as a stage-independent reference set of promoter positions. The per-sample tag clusters that go into it are in the DC CAGE-seq track.
--This track is part of the DANIO-CODE collection. -
-Promoters are drawn as blocks. The score reflects the CAGE expression supporting the promoter.
The DANIO-CODE consortium assembled 1,802 zebrafish developmental genomics datasets, 1,438 of them already published and 366 generated by consortium members, and reprocessed all of them from the raw sequencing reads so that samples from different laboratories and different protocols can be compared with each other. ChIP-seq and ATAC-seq were run through the ENCODE pipelines, CAGE-seq through the FANTOM pipeline,