-This track shows RNA-seq read coverage for 361 zebrafish samples collected by the -DANIO-CODE consortium, covering 31 developmental stages from the 1-cell stage through +This track is part of the DANIO-CODE track collection. +It shows RNA-seq read coverage for 361 zebrafish samples collected by the +consortium, covering 31 developmental stages from the 1-cell stage through epiboly, somitogenesis and organogenesis to the adult fish. The consortium used 139 of these samples to build an improved transcript annotation containing 31,458 genes and 55,596 transcripts, among them 726 long non-coding RNA genes and 167 transcripts of uncertain coding potential that Ensembl had not annotated.
--This track is part of the DANIO-CODE collection. -
-Every sample is shown as a coverage graph. For strand-specific libraries there are two graphs per sample: coverage on the forward strand in red and coverage on the reverse strand in blue. Unstranded libraries have a single graph.
Nothing is displayed until samples are selected on the track configuration page. There are more than 500 individual graphs, so turn on only the ones you need; the display becomes very slow otherwise. Samples can be filtered by developmental stage, by sequencing sample accession and by strand. Each graph is auto-scaled to the data in the window, so the height of a peak can be compared within one sample but not between samples.