f5c96c14557e69252db6935d20ea55bdd250e519
max
  Fri Sep 4 17:12:57 2026 -0700
DANIO-CODE as native danRer11 tracks, alpha only.

Converts the DANIO-CODE consortium's public track hub for danRer11 into a
native trackDb: 897 stanzas under one superTrack, with 11 containers for
RNA-seq, CAGE-seq, ChIP-seq, 3P-seq, Hi-C, regulatory elements, cell types,
COPEs/DOPEs, validated enhancers, conservation and consensus promoters.

The 879 data files, 69 GB, are mirrored under /gbdb/danRer11/danioCode and are
byte-identical to the consortium's copies. Four cell-type subtracks are left
out because their files 404 on the consortium's server.

refs #38265

diff --git src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra
index aea5fc4ba56..53b91906f71 100644
--- src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra
+++ src/hg/makeDb/trackDb/zebrafish/danRer11/trackDb.ra
@@ -35,15 +35,17 @@
 #include trackDb.refGene.ra public
 include ../../refSeqComposite.ra
 
 # include danRer11.GCA_052040795.1.chainNet.ra alpha
 # include danRer11.ce11.chainNet.ra alpha
 
 track dnaMethylation
 superTrack on
 shortLabel DNA Methylation
 longLabel DNA Methylation
 group regulation
 priority 3
 html dnaMethylation.html
 
 include methbase2.ra alpha
+
+include danioCode.ra alpha