a2b91b291a7c3823ff9e634612fcd85e9b8fd4b8
max
  Mon Jun 16 07:15:47 2025 -0700
clarifying docs after chris email, no redmine

diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh
index 629cda927ea..9aa5ddff5ca 100755
--- src/product/installer/browserSetup.sh
+++ src/product/installer/browserSetup.sh
@@ -361,34 +361,34 @@
                from UCSC on-the-fly. Much faster, but depending on how much
                you downloaded, means that you have many fewer tracks available.
   online     - put the browser online, so any missing files and tracks are
                loaded on-the-fly from UCSC.
   update     - update the genome browser software and data, updates
                all tables of an assembly, like "mirror"
   cgiUpdate  - update only the genome browser software, not the data. Not 
                recommended, see documentation.
   clean      - remove temporary files of the genome browser older than one 
                day, but do not delete any uploaded custom tracks
   addTools   - copy the UCSC User Tools, e.g. blat, featureBits, overlapSelect,
                bedToBigBed, pslCDnaFilter, twoBitToFa, gff3ToGenePred, 
                bedSort, ... to /usr/local/bin
                This has to be run after the browser has been installed, other-
                wise these packages may be missing: libpng zlib mariadb-client
-  dev        - install git/gcc/c++/freetype/etc, clone the kent repo into
+  dev        - setup git/gcc/c++/freetype/etc, clone the kent repo into
                ~/kent and build the CGIs into /usr/local/apache so you can try
                them right away. Useful if you want to develop your own track 
-               type. (OSX OK)
+               type. Usually, this is run after 'browserSetup.sh install' (OSX OK)
   mysql      - Patch my.cnf and recreate Mysql users. This can fix
                a broken Mysql server after an update to Mysql 8. 
                
 
 parameters for 'minimal', 'mirror' and 'update':
   <assemblyList>     - download Mysql + /gbdb files for a space-separated
                        list of genomes
 
 examples:
   bash $0 install     - install Genome Browser, do not download any genome
                         assembly, switch to on-the-fly mode (see the -f option)
   bash $0 minimal hg19 - download only the minimal tables for the hg19 assembly
   bash $0 mirror hg19 mm9 - download hg19 and mm9, switch
                         to offline mode (see the -o option)
   bash $0 -t noEncode mirror hg19  - install Genome Browser, download hg19