9de039a7dceb056ccfa604e0ac38e0bb901ef1ec
max
  Mon Mar 30 17:11:20 2026 -0700
MPRA track updates, #34284

diff --git src/hg/makeDb/doc/hg38/mpravardb.txt src/hg/makeDb/doc/hg38/mpravardb.txt
index f121a767414..d75552efde8 100644
--- src/hg/makeDb/doc/hg38/mpravardb.txt
+++ src/hg/makeDb/doc/hg38/mpravardb.txt
@@ -1,22 +1,14 @@
 # MPRAVarDB track
 # Mon Mar 10 2026 (claude/max)
 
 # Download data from https://mpravardb.rc.ufl.edu/
 mkdir -p /hive/data/genomes/hg38/bed/mpra/mpravardb
 cd /hive/data/genomes/hg38/bed/mpra/mpravardb
 wget 'https://mpravardb.rc.ufl.edu/session/27d7af46df917aed91f4cca7bee378a2/download/download_all?w=' -O mpravardb.csv
 
 # 242,818 variants from 18 MPRA studies, with both hg19 and hg38 coordinates.
 # 213,689 are hg19, 29,129 are hg38, 3,676 have no coordinates (NA).
 
 # Convert to BED, liftOver hg19->hg38, merge, and create bigBed:
 python3 ~/kent/src/hg/makeDb/scripts/mpravardb/mpravardbToBed.py
 # Output: mpravardb.bb (239,028 variants after liftOver, 114 unmapped)
-
-# Create gbdb symlink
-mkdir -p /gbdb/hg38/mpra
-ln -sf /hive/data/genomes/hg38/bed/mpra/mpravardb/mpravardb.bb /gbdb/hg38/mpra/mpravardb.bb
-
-# Rebuild trackDb
-cd ~/kent/src/hg/makeDb/trackDb
-make DBS=hg38