f43f1239645183b88a00b3de83f74fd5553e6ce1 max Thu Mar 12 07:52:35 2026 -0700 Add gnomAD STR genotype track under gnomadVariants supertrack 87 disease-associated STR loci from gnomAD v3.1.3, aggregated from ~1.4M individual genotypes (18,511 WGS samples, ExpansionHunter v5). Includes allele frequency distributions and population breakdowns. Added relatedTracks links to strVar supertrack, refs #35420, refs #36652 Co-Authored-By: Claude Opus 4.6 diff --git src/hg/makeDb/scripts/gnomadStr/gnomadStr.as src/hg/makeDb/scripts/gnomadStr/gnomadStr.as new file mode 100644 index 00000000000..77c4394d926 --- /dev/null +++ src/hg/makeDb/scripts/gnomadStr/gnomadStr.as @@ -0,0 +1,21 @@ +table gnomadStr +"gnomAD Short Tandem Repeat genotype summary at disease-associated loci" + ( + string chrom; "Chromosome" + uint chromStart; "Start position (0-based)" + uint chromEnd; "End position" + string name; "Locus ID" + uint score; "Score (0-1000)" + char[1] strand; "Strand" + uint thickStart; "Thick start" + uint thickEnd; "Thick end" + uint reserved; "Item color RGB" + string gene; "Gene symbol" + lstring motif; "Repeat motif(s)" + string isAdjacentRepeat; "Is adjacent repeat (True/False)" + uint nSamples; "Total number of genotyped individuals" + uint nPass; "Number passing quality filter" + lstring alleles; "Allele sizes (comma-separated repeat counts)" + lstring alleleFreqs; "Allele frequencies (comma-separated)" + lstring populations; "Population sample counts (pop:n, comma-separated)" + )