18bdb7e650b738210115316787b9691f4d4c6969 max Fri Jul 4 05:21:50 2025 -0700 adding bionano tracks to hg19 and hg38, refs #36033 diff --git src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra index 3f7b9801436..407dd5308f7 100644 --- src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra +++ src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra @@ -1,435 +1,443 @@ track exomeProbesets shortLabel Exome Probesets longLabel Exome Capture Probesets and Targeted Region type bigBed group map visibility hide allButtonPair on compositeTrack on track xGen_Research_Probes parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-probes-hg19.bb shortLabel IDT xGen v1.0 P longLabel IDT - xGen Exome Research Panel V1.0 Probes type bigBed visibility dense color 255,176,0 track xGen_Research_Targets parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-targets-hg19.bb shortLabel IDT xGen V1.0 T longLabel IDT - xGen Exome Research Panel V1.0 Target Regions type bigBed visibility dense color 255,176,0 track xGen_Research_Probes_V2 parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-v2-probes-hg19.bb shortLabel IDT xGen V2.0 P longLabel IDT - xGen Exome Research Panel V2.0 Probes type bigBed visibility dense color 255,176,0 track xGen_research_Targets_V2 parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/xgen-exome-research-panel-v2-targets-hg19.bb shortLabel IDT xGen V2.0 T longLabel IDT - xGen Exome Research Panel V2.0 Target Regions type bigBed visibility dense color 255,176,0 track Twist_Comp_Exome_Target parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/TwistCompExomeTarget_hg19.bb shortLabel Twist Compr. T longLabel Twist - Comprehensive Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Exome_RefSeq_Targets parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/TwistExomeRefSeqTargets_hg19.bb shortLabel Twist RefSeq T longLabel Twist - RefSeq Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Exome_Target parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/TwistExomeTarget_hg19.bb shortLabel Twist Core T longLabel Twist - Core Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Exome_Target2 parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/TwistExome21.bb shortLabel Twist Exome 2.0 longLabel Twist - Exome 2.0 Panel Target Regions type bigBed visibility dense color 254,97,0 track MGI_Exome_Capture_V4 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/MGI_Exome_Capture_V4.bb shortLabel MGI Easy V4 T longLabel MGI - Easy Exome Capture V4 Target Regions type bigBed visibility dense color 220,38,127 track MGI_Exome_Capture_V5 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/MGI_Exome_Capture_V5.bb shortLabel MGI Easy V5 T longLabel MGI - Easy Exome Capture V5 Target Regions type bigBed visibility dense color 220,38,127 track Agilent_Human_Exon_V7_Regions parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/S31285117_Regions.bb shortLabel SureSel. V7 T longLabel Agilent - SureSelect All Exon V7 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V7_Covered parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/S31285117_Covered.bb shortLabel SureSel. V7 P longLabel Agilent - SureSelect All Exon V7 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_Clinical_Research_V2_Regions parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/S30409818_Regions.bb shortLabel SureSel. Clinical V2 T longLabel Agilent - SureSelect Clinical Research Exome V2 Target type bigBed color 120,94,240 track Agilent_Human_Exon_Clinical_Research_V2_Covered parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/S30409818_Covered.bb shortLabel SureSel. Clinical V2 P longLabel Agilent - SureSelect Clinical Research Exome V2 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V6_UTRs_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604624_Regions.bb shortLabel SureSelect SureSel. V6+UTR T longLabel Agilent - SureSelect All Exon V6 + UTR r2 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V6_UTRs_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604624_Covered.bb shortLabel SureSel. V6+UTR P longLabel Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V6_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604514_Regions.bb shortLabel SureSel. V6 T longLabel Agilent - SureSelect All Exon V6 r2 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V6_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604514_Covered.bb shortLabel SureSel. V6 P longLabel Agilent - SureSelect All Exon V6 r2 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V6_COSMIC_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604715_Regions.bb shortLabel SureSel. V6+COSMIC T longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V6_COSMIC_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07604715_Covered.bb shortLabel SureSel. V6+COSMIC P longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_Focused_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07084713_Regions.bb shortLabel SureSel. Focused T longLabel Agilent - SureSelect Focused Exome Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_Focused_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S07084713_Covered.bb shortLabel SureSel. Focused P longLabel Agilent - SureSelect Focused Exome Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_Clinical_Research_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S06588914_Regions.bb shortLabel SureSel. Clinical T longLabel Agilent - SureSelect Clinical Research Exome Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_Clinical_Research_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S06588914_Covered.bb shortLabel SureSel. Clinical P longLabel Agilent - SureSelect Clinical Research Exome Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V5_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S04380110_Regions.bb shortLabel SureSel. V5 T longLabel Agilent - SureSelect All Exon V5 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V5_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S04380110_Covered.bb shortLabel SureSel. V5 P longLabel Agilent - SureSelect All Exon V5 Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V5_UTRs_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S04380219_Regions.bb shortLabel SureSel. V5+UTR T longLabel Agilent - SureSelect All Exon V5 + UTRs Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V5_UTRs_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S04380219_Covered.bb shortLabel SureSel. V5+UTR P longLabel Agilent - SureSelect All Exon V5 + UTRs Covered by Probes type bigBed color 120,94,240 track Agilent_Human_Exon_V4_UTRs_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S03723424_Regions.bb shortLabel SureSel. V4+UTR T longLabel Agilent - SureSelect All Exon V4 + UTRs Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V4_UTRs_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S03723424_Covered.bb shortLabel SureSel. V4+UTR P longLabel Agilent - SureSelect All Exon V4 + UTRs Covered by Probe type bigBed color 120,94,240 track Agilent_Human_Exon_V4_Regions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S03723314_Regions.bb shortLabel SureSel. V4 T longLabel Agilent - SureSelect All Exon V4 Target Regions type bigBed color 120,94,240 track Agilent_Human_Exon_V4_Covered parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/S03723314_Covered.bb shortLabel SureSel. V4 P longLabel Agilent - SureSelect All Exon V4 Covered by Probes type bigBed color 120,94,240 track KAPA_HyperExome_hg19_capture_targets parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/KAPA_HyperExome_hg19_capture_targets.bb shortLabel KAPA Hyper P longLabel Roche - KAPA HyperExome Capture Probe Footprint type bigBed 4 color 100,143,255 track KAPA_HyperExome_hg19_primary_targets parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/sorted-KAPA_HyperExome_hg19_primary_targets.bb shortLabel KAPA Hyper T longLabel Roche - KAPA HyperExome Primary Target Regions type bigBed 4 color 100,143,255 track SeqCap_EZ_ExomeV3_Plus_UTR_hg19_primary_annotated parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_ExomeV3_Plus_UTR_hg19_primary_annotated.bb shortLabel SeqCap EZ V3 UTR T longLabel Roche - SeqCap EZ Exome V3 + UTR Primary Target Regions type bigBed 4 color 100,143,255 track SeqCap_EZ_Exome_v3_hg19_capture parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_Exome_v3_hg19_capture_targets.bb shortLabel SeqCap EZ V3 P longLabel Roche - SeqCap EZ Exome V3 Capture Probe Footprint type bigBed 4 color 100,143,255 track SeqCap_EZ_ExomeV3_Plus_UTR_hg19_capture_annotated parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_ExomeV3_Plus_UTR_hg19_capture_annotated.bb shortLabel SeqCap EZ V3 UTR P longLabel Roche - SeqCap EZ Exome V3 + UTR Capture Probe Footprint type bigBed 3 color 100,143,255 track SeqCap_EZ_Exome_v3_hg19_primary parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_Exome_v3_hg19_primary_targets.bb shortLabel SeqCap EZ V3 T longLabel Roche - SeqCap EZ Exome V3 Primary Target Regions type bigBed 4 color 100,143,255 track SeqCap-EZ_MedExomePlusMito_hg19_capture parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_MedExomePlusMito_hg19_capture_targets.bb shortLabel SeqCap EZ Med+Mito P longLabel Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint type bigBed 4 color 100,143,255 track SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg19_empirical_targets.bb shortLabel SeqCap EZ Med+Mito T longLabel Roche - SeqCap EZ MedExome + Mito Empirical Target Regions type bigBed 3 color 100,143,255 track SeqCap-EZ_MedExome_hg19_capture_targets parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted-SeqCap_EZ_MedExome_hg19_capture_targets.bb shortLabel SeqCap EZ Med P longLabel Roche - SeqCap EZ MedExome Capture Probe Footprint type bigBed 4 color 100,143,255 track SeqCap-EZ_MedExome_hg19_empirical_targets parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/sorted_SeqCap_EZ_MedExome_hg19_empirical_targets.bb shortLabel SeqCap EZ Med T longLabel Roche - SeqCap EZ MedExome Empirical Target Regions type bigBed 4 color 100,143,255 track truseq-dna-exome-targeted-manifest-v1-2 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/truseq-dna-exome-targeted-regions-manifest-v1-2.bb shortLabel TruSeq DNA V1.2 T longLabel Illumina - TruSeq DNA Exome V1.2 Target Regions type bigBed 4 color 22,62,164 track nexterarapidcapture_exome_targetedregions_v1 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_exome_targetedregions_v1.2.bb shortLabel Nextera Rapid V1.2 T longLabel Illumina - Nextera Rapid Capture Exome V1.2 Target Regions type bigBed 4 color 22,62,164 track nexterarapidcapture_exome_targetedregions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_exome_targetedregions.bb shortLabel Nextera Rapid T longLabel Illumina - Nextera Rapid Capture Exome Target Regions type bigBed 4 color 22,62,164 track nexterarapidcapture_expandexome_targetedregions parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/nexterarapidcapture_expandedexome_targetedregions.bb shortLabel Nextera Rapid Exp. T longLabel Illumina - Nextera Rapid Capture Expanded Exome Target Regions type bigBed 4 color 22,62,164 track truseq-rapid-exome-targeted-regions-manifest-v1-2 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/truseq-rapid-exome-targeted-regions-manifest-v1-2.bb shortLabel TruSeq Rapid v1.2 T longLabel Illumina - TruSeq Rapid Exome V1.2 Target Regions Regions type bigBed 4 color 22,62,164 track nextera-dna-exome-targeted-regions-manifest-v1-2 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/nextera-dna-exome-targeted-regions-manifest-v1-2.bb shortLabel Nextera DNA V1.2 T longLabel Illumina - Nextera DNA Exome V1.2 Target Regions type bigBed 4 color 22,62,164 track TSOne_Expanded_BED_v2 parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/TSOne_Expanded_BED_v2.0.bb shortLabel TruSight One Exp. V2.0 T longLabel Illumina - TruSight ONE Expanded V2.0 Target Regions type bigBed 4 color 22,62,164 track TruSight_One_v1 parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/TruSight_One_v1.1.bb shortLabel TruSight One V1.1 T longLabel Illumina - TruSight ONE V1.1 Target Regions type bigBed 4 color 22,62,164 track trusight_exome_manifest_a parent exomeProbesets off bigDataUrl /gbdb/hg19/exomeProbesets/trusight_exome_manifest_a.bb shortLabel TruSight Target longLabel Illumina - TruSight Exome Target Regions type bigBed 4 color 22,62,164 track AmpliSeq-Target parent exomeProbesets on bigDataUrl /gbdb/hg19/exomeProbesets/Exome.dna_manifest.20180509.bb shortLabel AmpliSeq Target longLabel Illumina - AmpliSeq Exome Panel Target Regions type bigBed 4 color 22,62,164 + + track bionano + parent exomeProbesets on + bigDataUrl /gbdb/hg19/exomeProbesets/hg19_CTTAAG_0kb_0labels.bb + shortLabel BioNano DLE-1 + longLabel BioNao DLE-1 CTTAAG sites + type bigBed + color 100,255,143