65091fe6f6487c23d650a144e947fc1c582d3f40
max
  Tue Apr 21 02:16:16 2026 -0700
abelSv: move under lrSv supertrack as short-read comparison subtrack

Move the Abel et al. 2020 CCDG 17,795-genome SV callset from a
top-level hg38 track to a subtrack of the lrSv supertrack (parallel
to onekg3202Sr) and relabel shortLabel/longLabel to flag Illumina
short-read provenance. The same bigBed is now visible on hg38 in
the long-read SV browsing context. Also:

- Clarify abelSv.html variant counts: 738,624 upstream unique SVs
across both callsets, 737,998 after B37->hg38 liftOver (626
unmapped). B38=458,106, B37lift=279,892.
- lrSv.html: fix triple-slash https:/// in the Ebert et al. Science
reference URL.
- bigBed.html: add closing </li> on the extra-fields pipe-separator
bullet and tighten a comma in the same sentence.

refs #36258, refs #37376

diff --git src/hg/makeDb/trackDb/human/hg38/abelSv.ra src/hg/makeDb/trackDb/human/hg38/abelSv.ra
deleted file mode 100644
index 30a00572a32..00000000000
--- src/hg/makeDb/trackDb/human/hg38/abelSv.ra
+++ /dev/null
@@ -1,37 +0,0 @@
-track abelSv
-shortLabel Abel CCDG SVs
-longLabel Structural variants in 17,795 genomes from Abel et al 2020 (CCDG, NYGC, Baylor)
-group varRep
-type bigBed 9 +
-visibility hide
-itemRgb on
-bigDataUrl /gbdb/$D/abelSv/abelSv.bb
-labelFields name,svType,svLength,af
-defaultLabelFields svType
-mouseOverField svType
-skipEmptyFields on
-skipFields mateChrom,matePos
-filterValues.svType DEL|deletion,DUP|duplication,INV|inversion,MEI|mobile element insertion,BND|breakend/translocation
-filterType.svType multipleListOr
-filterValues.callset B38|Native GRCh38 callset (14623 samples),B37lift|Lifted from GRCh37 callset (8417 samples)
-filterType.callset multipleListOr
-filterValues.filter PASS|High confidence,LOW|Low confidence
-filterType.filter multipleListOr
-filterByRange.af on
-filter.af 0:1
-filterLimits.af 0:1
-filterLabel.af Allele frequency (AF)
-filterByRange.svLength on
-filter.svLength 0:250000000
-filterLimits.svLength -1:250000000
-filterLabel.svLength SV length (bp; -1 for BND)
-filterByRange.msq on
-filter.msq 0:500
-filterLimits.msq 0:500
-filterLabel.msq Mean sample quality (MSQ)
-filterByRange.ac on
-filter.ac 0:30000
-filterLimits.ac 0:30000
-filterLabel.ac Allele count (AC)
-url https://www.nature.com/articles/s41586-020-2371-0
-urlLabel Abel et al, Nature 2020: