18bdb7e650b738210115316787b9691f4d4c6969 max Fri Jul 4 05:21:50 2025 -0700 adding bionano tracks to hg19 and hg38, refs #36033 diff --git src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra index 2abdfeef34d..9b39261e645 100644 --- src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra +++ src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra @@ -1,255 +1,263 @@ track exomeProbesets shortLabel Exome Probesets longLabel Exome Capture Probesets and Targeted Region group map type bigBed visibility hide allButtonPair on compositeTrack on track xGen_Research_Probes_V1 parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-probes-hg38.bb shortLabel IDT xGen V1 P longLabel IDT - xGen Exome Research Panel V1 Probes type bigBed color 100,143,255 track xGen_Research_Targets_V1 parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-targets-hg38.bb shortLabel IDT xGen V1 T longLabel IDT - xGen Exome Research Panel V1 Target Regions type bigBed color 100,143,255 track xGen_Research_Probes_V2 parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-v2-probes-hg38.bb shortLabel IDT xGen V2 P longLabel IDT - xGen Exome Research Panel V2 Probes type bigBed visibility dense color 100,143,255 track xGen_Research_Targets_V2 parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-v2-targets-hg38.bb shortLabel IDT xGen V2 T longLabel IDT - xGen Exome Research Panel V2 Target Regions type bigBed visibility dense color 100,143,255 track Twist_Exome_RefSeq_Targets parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/Twist_Exome_RefSeq_targets_hg38.bb shortLabel Twist RefSeq T longLabel Twist - RefSeq Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Exome_Target parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/Twist_Exome_Target_hg38.bb shortLabel Twist Core T longLabel Twist - Bioscience - Core Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Comp_Exome_Target parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/Twist_ComprehensiveExome_targets_hg38.bb shortLabel Twist Compr. T longLabel Twist - Comprehensive Exome Panel Target Regions type bigBed visibility dense color 254,97,0 track Twist_Exome_Target2 parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/TwistExome21.bb shortLabel Twist Exome 2.0 longLabel Twist - Exome 2.0 Panel Target Regions type bigBed visibility dense color 254,97,0 track Agilent_Human_Exon_Focused_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07084713_Covered.bb shortLabel SureSel. Focused P longLabel Agilent - SureSelect Focused Exome Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_Focused_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07084713_Regions.bb shortLabel SureSel. Focused T longLabel Agilent - SureSelect Focused Exome Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_Clinical_Research_V2_Covered parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/S30409818_Covered.bb shortLabel SureSel. Clinical V2 P longLabel Agilent - SureSelect Clinical Research Exome V2 Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_Clinical_Research_V2_Regions parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/S30409818_Regions.bb shortLabel SureSel. Clinical V2 T longLabel Agilent - SureSelect Clinical Research Exome V2 Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V4_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S04380110_Covered.bb shortLabel SureSel. V4+UTR P longLabel Agilent - SureSelect All Exon V4 + UTRs Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V4_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S04380110_Regions.bb shortLabel SureSel. V4+UTR T longLabel Agilent - SureSelect All Exon V4 + UTRs Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V5_UTRs_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S04380219_Covered.bb shortLabel SureSel. V5+UTR P longLabel Agilent - SureSelect All Exon V5 + UTRs Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V5_UTRs_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S04380219_Regions.bb shortLabel SureSel. V5+UTR T longLabel Agilent - SureSelect All Exon V5 + UTRs Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V6_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Covered.bb shortLabel SureSel. V6 P longLabel Agilent - SureSelect All Exon V6 r2 Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V6_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Regions.bb shortLabel SureSel. V6 T longLabel Agilent - SureSelect All Exon V6 r2 Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V6_COSMIC_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604715_Covered.bb shortLabel SureSel. V6+COSMIC P longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V6_COSMIC_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604715_Regions.bb shortLabel SureSel. V6+COSMIC T longLabel Agilent - SureSelect All Exon V6 + COSMIC r2 Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V6_UTRs_Covered parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604624_Covered.bb shortLabel SureSel. V6+UTR P longLabel Agilent - SureSelect All Exon V6 + UTR r2 Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V6_UTRs_Regions parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/S07604624_Regions.bb shortLabel SureSel. V6 +UTR T longLabel Agilent - SureSelect All Exon V6 + UTR r2 Target Regions type bigBed color 255,36,36 track Agilent_Human_Exon_V7_Covered parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/S31285117_Covered.bb shortLabel SureSel. V7 P longLabel Agilent - SureSelect All Exon V7 Covered by Probes type bigBed color 255,36,36 track Agilent_Human_Exon_V7_Regions parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/S31285117_Regions.bb shortLabel SureSel. V7 T longLabel Agilent - SureSelect All Exon V7 Target Regions type bigBed color 255,36,36 track KAPA_HyperExome_hg38_capture_targets parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_capture_targets.bb shortLabel KAPA Hyper P longLabel Roche - KAPA HyperExome Capture Probe Footprint type bigBed color 100,143,255 track KAPA_HyperExome_hg38_primary_targets parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_primary_targets.bb shortLabel KAPA Hyper T longLabel Roche - KAPA HyperExome Primary Target Regions type bigBed color 100,143,255 track SeqCap-EZ_MedExome_hg38_capture_targets parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExome_hg38_capture_targets.bb shortLabel SeqCap EZ Med P longLabel Roche - SeqCap EZ MedExome Capture Probe Footprint type bigBed color 100,143,255 track SeqCap-EZ_MedExome_hg19_empirical_targets parent exomeProbesets off bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExome_hg38_empirical_targets.bb shortLabel SeqCap EZ Med T longLabel Roche - SeqCap EZ MedExome Empirical Target Regions type bigBed color 100,143,255 track SeqCap-EZ_MedExomePlusMito_hg19_capture_targets parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_capture_targets.bb shortLabel SeqCap EZ Med+Mito P longLabel Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint type bigBed color 100,143,255 track SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets parent exomeProbesets on bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_empirical_targets.bb shortLabel SeqCap EZ Med+Mito T longLabel Roche - SeqCap EZ MedExome + Mito Empirical Target Regions type bigBed color 100,143,255 + track bionano + parent exomeProbesets on + bigDataUrl /gbdb/hg38/exomeProbesets/hg38_CTTAAG_0kb_0labels.bb + shortLabel BioNano DLE-1 + longLabel BioNao DLE-1 CTTAAG sites + type bigBed + color 100,255,143 + release alpha