66419809158cb8192f2d8b19b43f4484a4d4c354 max Mon Apr 6 08:57:28 2026 -0700 tdb fix diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra index 66852cc8a4a..ca1304a9380 100644 --- src/hg/makeDb/trackDb/human/lrSv.ra +++ src/hg/makeDb/trackDb/human/lrSv.ra @@ -1,111 +1,111 @@ track lrSv superTrack on shortLabel Long-read SVs longLabel Structural Variants from Long-read Sequencing group varRep visibility hide track han945Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/han945.bb shortLabel Han 945 SVs longLabel Structural Variants from 945 Han Chinese (Long-read Sequencing) type bigBed 9 + itemRgb on visibility dense mouseOver $name ($svType) len=$svLen AF=$alleleFreq samples=$sampleCount filterValues.svType DEL,INS,DUP,INV,TRA filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99743 filterByRange.svLen on filterLabel.svLen SV Length filter.sampleCount 1:945 filterByRange.sampleCount on filterLabel.sampleCount Number of Supporting Samples filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on urls chr2="hgTracks?position=$$" track lrSv1kgOnt parent lrSv bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb shortLabel 1KG ONT SVs longLabel Structural Variants from 1,019 Diverse Humans (1000 Genomes ONT) type bigBed 9 + itemRgb on visibility dense mouseOver $name ($svClass) len=$svLen type=$insType family=$family AC=$alleleCount AF=$alleleFreq filterValues.svClass DEL,INS,COMPLEX filterType.svClass multipleListOr filterLabel.svClass SV Class filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo filterType.insType multipleListOr filterLabel.insType Insertion/Deletion Type filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA filterType.family multipleListOr filterLabel.family Transposon Family filterByRange.svLen on filterLabel.svLen SV Length filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filterByRange.alleleCount on filterLabel.alleleCount Allele Count skipEmptyFields on track tommoJpSv parent lrSv - bigDataUrl /gbdb/hg38/lrSv/tommoJp.bb + bigDataUrl /gbdb/$D/lrSv/tommoJp.bb shortLabel ToMMo Japanese SVs longLabel Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios) type bigBed 9 + itemRgb on visibility dense mouseOver $name ($svType) len=$svLen AF=$alleleFreq AC=$alleleCount filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 51:99980 filterByRange.svLen on filterLabel.svLen SV Length filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.alleleCount 0:444 filterByRange.alleleCount on filterLabel.alleleCount Allele Count track aou1kSv parent lrSv - bigDataUrl /gbdb/hg38/lrSv/aou1k.bb + bigDataUrl /gbdb/$D/lrSv/aou1k.bb shortLabel AoU 1K SVs longLabel Structural Variants from 1,027 AoU Individuals (PacBio HiFi Long-read) type bigBed 9 + itemRgb on visibility dense mouseOver $name ($svType) len=$svLen AF_AFR=$afAfr AF_EUR=$afEur filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type #filter.svLen 50:9998 filterByRange.svLen on filterLabel.svLen SV Length #filter.afAfr 0:1 filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African #filter.afEur 0:1 filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European #filter.afEas 0:1 filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian skipEmptyFields on