66419809158cb8192f2d8b19b43f4484a4d4c354
max
Mon Apr 6 08:57:28 2026 -0700
tdb fix
diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index 66852cc8a4a..ca1304a9380 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -1,111 +1,111 @@
track lrSv
superTrack on
shortLabel Long-read SVs
longLabel Structural Variants from Long-read Sequencing
group varRep
visibility hide
track han945Sv
parent lrSv
bigDataUrl /gbdb/$D/lrSv/han945.bb
shortLabel Han 945 SVs
longLabel Structural Variants from 945 Han Chinese (Long-read Sequencing)
type bigBed 9 +
itemRgb on
visibility dense
mouseOver $name ($svType) len=$svLen AF=$alleleFreq samples=$sampleCount
filterValues.svType DEL,INS,DUP,INV,TRA
filterType.svType multipleListOr
filterLabel.svType SV Type
filter.svLen 0:99743
filterByRange.svLen on
filterLabel.svLen SV Length
filter.sampleCount 1:945
filterByRange.sampleCount on
filterLabel.sampleCount Number of Supporting Samples
filter.alleleFreq 0:1
filterByRange.alleleFreq on
filterLimits.alleleFreq 0:1
filterLabel.alleleFreq Allele Frequency
skipEmptyFields on
urls chr2="hgTracks?position=$$"
track lrSv1kgOnt
parent lrSv
bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb
shortLabel 1KG ONT SVs
longLabel Structural Variants from 1,019 Diverse Humans (1000 Genomes ONT)
type bigBed 9 +
itemRgb on
visibility dense
mouseOver $name ($svClass) len=$svLen type=$insType family=$family AC=$alleleCount AF=$alleleFreq
filterValues.svClass DEL,INS,COMPLEX
filterType.svClass multipleListOr
filterLabel.svClass SV Class
filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo
filterType.insType multipleListOr
filterLabel.insType Insertion/Deletion Type
filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA
filterType.family multipleListOr
filterLabel.family Transposon Family
filterByRange.svLen on
filterLabel.svLen SV Length
filterByRange.alleleFreq on
filterLimits.alleleFreq 0:1
filterLabel.alleleFreq Allele Frequency
filterByRange.alleleCount on
filterLabel.alleleCount Allele Count
skipEmptyFields on
track tommoJpSv
parent lrSv
- bigDataUrl /gbdb/hg38/lrSv/tommoJp.bb
+ bigDataUrl /gbdb/$D/lrSv/tommoJp.bb
shortLabel ToMMo Japanese SVs
longLabel Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios)
type bigBed 9 +
itemRgb on
visibility dense
mouseOver $name ($svType) len=$svLen AF=$alleleFreq AC=$alleleCount
filterValues.svType DEL,INS
filterType.svType multipleListOr
filterLabel.svType SV Type
filter.svLen 51:99980
filterByRange.svLen on
filterLabel.svLen SV Length
filter.alleleFreq 0:1
filterByRange.alleleFreq on
filterLimits.alleleFreq 0:1
filterLabel.alleleFreq Allele Frequency
filter.alleleCount 0:444
filterByRange.alleleCount on
filterLabel.alleleCount Allele Count
track aou1kSv
parent lrSv
- bigDataUrl /gbdb/hg38/lrSv/aou1k.bb
+ bigDataUrl /gbdb/$D/lrSv/aou1k.bb
shortLabel AoU 1K SVs
longLabel Structural Variants from 1,027 AoU Individuals (PacBio HiFi Long-read)
type bigBed 9 +
itemRgb on
visibility dense
mouseOver $name ($svType) len=$svLen AF_AFR=$afAfr AF_EUR=$afEur
filterValues.svType DEL,INS
filterType.svType multipleListOr
filterLabel.svType SV Type
#filter.svLen 50:9998
filterByRange.svLen on
filterLabel.svLen SV Length
#filter.afAfr 0:1
filterByRange.afAfr on
filterLimits.afAfr 0:1
filterLabel.afAfr AF African
#filter.afEur 0:1
filterByRange.afEur on
filterLimits.afEur 0:1
filterLabel.afEur AF European
#filter.afEas 0:1
filterByRange.afEas on
filterLimits.afEas 0:1
filterLabel.afEas AF East Asian
skipEmptyFields on