fc9499685c393b53e740badf03554c65e1a0db79 mspeir Wed Jul 22 10:14:35 2026 -0700 Fix gb101 tutorial typo and expand the blue-bar menu list Correct the track visibility modes (dense, squish, pack, full) and add the Downloads and View menus to the Navigating the Menus section. refs #37355 Co-Authored-By: Claude Opus 4.8 (1M context) diff --git docs/tutorials/gb101.md docs/tutorials/gb101.md index eeed5c0e0da..5ea6f09d769 100644 --- docs/tutorials/gb101.md +++ docs/tutorials/gb101.md @@ -69,36 +69,38 @@ --->
```image src=/images/bluebarMenuGif.gif width=70% ```
The navigation bar at the top of the page will allow you to access our tools, downloads, and help pages. -There are five main drop-downs that are useful for most users: +Several of these drop-downs are useful for most users: - Genomes - switch between the many genomes available. - Genome Browser - configure, search for tracks, and reset the Genome Browser back to the default settings. - Tools - access to features such as [BLAT](/cgi-bin/hgBlat), [isPCR](/cgi-bin/hgPcr), and [LiftOver](/cgi-bin/hgLiftOver). The [Table Browser](/cgi-bin/hgTables) can also export track data in various file formats. +- Downloads - download sequence and annotation data in bulk, along with our command-line utilities. - My Data - create stable short links ([Sessions](/cgi-bin/hgSession)) and visualize your own data via [custom tracks](/cgi-bin/hgCustom) or [track hubs](/cgi-bin/hgHubConnect). +- View - save the current image as a PDF, get the DNA sequence for the window, or open the region in an external tool. - Help - access contact information, FAQs, and Browser Documentation.
--- ### Using the Search Box
The search bar allows you to navigate to a region on the genome using [genome coordinates](https://genome-blog.soe.ucsc.edu/blog/2016/12/12/the-ucsc-genome-browser-coordinate-counting-systems/), [gene symbols](https://genome.ucsc.edu/FAQ/FAQgenes.html#genename), [rsIDs](https://www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about/#what-is-a-reference-snp), [HGVS](http://varnomen.hgvs.org/) terms, or DNA sequence. You can even @@ -190,31 +192,31 @@ ### Track Display Modes
```image src=/images/trackVisExamples.png width=95% ```
Annotation tracks can be entirely hidden or shown in four different ways that take an increasing amount of vertical space: -[dense, squish, squish, and full](/goldenPath/help/hgTracksHelp.html#TRACK_CONT). +[dense, squish, pack, and full](/goldenPath/help/hgTracksHelp.html#TRACK_CONT). *Pack display is the recommended visibility for most data types as it provides the best balance of information and space.* After changing a track's display mode, the change will not be applied until you refresh the page. You can either refresh the page manually using your web browser or click on any of the track groups.
--- ### Searching for Data Tracks