fc9499685c393b53e740badf03554c65e1a0db79 mspeir Wed Jul 22 10:14:35 2026 -0700 Fix gb101 tutorial typo and expand the blue-bar menu list Correct the track visibility modes (dense, squish, pack, full) and add the Downloads and View menus to the Navigating the Menus section. refs #37355 Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com> diff --git docs/tutorials/gb101.md docs/tutorials/gb101.md index eeed5c0e0da..5ea6f09d769 100644 --- docs/tutorials/gb101.md +++ docs/tutorials/gb101.md @@ -69,36 +69,38 @@ ---> <div class="row"> <div class="col-md-6"> ```image src=/images/bluebarMenuGif.gif width=70% ``` </div> <div class="col-md-6"> The navigation bar at the top of the page will allow you to access our tools, downloads, and help pages. -There are five main drop-downs that are useful for most users: +Several of these drop-downs are useful for most users: - Genomes - switch between the many genomes available. - Genome Browser - configure, search for tracks, and reset the Genome Browser back to the default settings. - Tools - access to features such as [BLAT](/cgi-bin/hgBlat), [isPCR](/cgi-bin/hgPcr), and [LiftOver](/cgi-bin/hgLiftOver). The [Table Browser](/cgi-bin/hgTables) can also export track data in various file formats. +- Downloads - download sequence and annotation data in bulk, along with our command-line utilities. - My Data - create stable short links ([Sessions](/cgi-bin/hgSession)) and visualize your own data via [custom tracks](/cgi-bin/hgCustom) or [track hubs](/cgi-bin/hgHubConnect). +- View - save the current image as a PDF, get the DNA sequence for the window, or open the region in an external tool. - Help - access contact information, FAQs, and Browser Documentation. </div> </div> --- ### Using the Search Box <div class="row"> <div class="col-md-6"> The search bar allows you to navigate to a region on the genome using [genome coordinates](https://genome-blog.soe.ucsc.edu/blog/2016/12/12/the-ucsc-genome-browser-coordinate-counting-systems/), [gene symbols](https://genome.ucsc.edu/FAQ/FAQgenes.html#genename), [rsIDs](https://www.ncbi.nlm.nih.gov/snp/docs/RefSNP_about/#what-is-a-reference-snp), [HGVS](http://varnomen.hgvs.org/) terms, or DNA sequence. You can even @@ -190,31 +192,31 @@ ### Track Display Modes <div class="row"> <div class="col-md-6"> ```image src=/images/trackVisExamples.png width=95% ``` </div> <div class="col-md-6"> Annotation tracks can be entirely hidden or shown in four different ways that take an increasing amount of vertical space: -[dense, squish, squish, and full](/goldenPath/help/hgTracksHelp.html#TRACK_CONT). +[dense, squish, pack, and full](/goldenPath/help/hgTracksHelp.html#TRACK_CONT). *Pack display is the recommended visibility for most data types as it provides the best balance of information and space.* After changing a track's display mode, the change will not be applied until you refresh the page. You can either refresh the page manually using your web browser or click <button>refresh</button> on any of the track groups. </div> </div> --- ### Searching for Data Tracks <div class="row">