5b71760c9bfaa3aa819aa1d128eb822c95e9463e mspeir Mon Mar 9 10:46:45 2026 -0700 tweaks to genome setting description to describe GenArk, no refs diff --git src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml index 6e8c6722ce6..cd25cb7b915 100644 --- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml +++ src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml @@ -6935,33 +6935,36 @@ <P>Specify a relative path or URL link to a webpage (e.g. a paper) describing the hub. For public hubs, this can be used to highlight key words to make searching easier and direct users to your hub. </P> <P><B>Example:</B></P> <pre> descriptionUrl castorBeanHubDescription.html</pre> </DIV> <DIV class="email"><span class="types all"></span> <div class="format"><code>email <email address></code></div> <P>Provides users with a contact point for questions related to the hub.</P> <P><B>Example:</B></P> <pre> email contactEmail@institution.edu</pre> </DIV> -<DIV class="hubGenome"><span class="types all"></span> +<DIV class="genome"><span class="types all"></span> <div class="format"><code>genome <str></code></div> - <P>For hubs on native assemblies, use the UCSC database name (e.g. hg38).</P> + <P>For hubs on native assemblies, use the UCSC database name (e.g. hg38). + Genome assemblies in our <a href="https://hgdownload.gi.ucsc.edu/hubs" + target="_blank">GenArk Archive</a> can be referenced using their + GCA_NNN or GCA_NNN identifier (e.g. GCF_000891275.1).</P> <p>For custom assemblies, create your own name. This will appear on title pages in the Genome Browser.</p> <P><B>Example:</B></P> <pre> genome ricCom1</pre> </DIV> <DIV class="genomesFile"><span class="types all"></span> <div class="format"><code>genomesFile <url/relativePath></code></div> <P>References the next definition file in this hub that will describe the assemblies and tracks available at this hub. Typically, genomes.txt is at the same directory level as this hub.txt; however, it can also be a relative path reference to a different directory level.</p> <p>Not needed if using <code>useOneFile</code> (recommended).</p> <P><B>Example:</B></P> <pre> genomesFile genomes.txt</pre>