ecb6ac9da06193c59e5a59dee24d6a02872eb407 mspeir Thu Sep 3 09:39:08 2026 -0700 store: fix the last two absolute links on the page Code review caught two links d8a3c66 missed. The gbic.html one in the GBiC firewall list is the same problem that commit fixed and gets the same fix: it is now relative, so it resolves against whichever copy of the page you are reading. The other is not the same problem. It was a bare URL in parentheses rather than a link, and genome.ucsc.edu/downloads.html is not a page in htdocs at all, it is a redirect to hgdownload. Making it relative would have given a 404 on every host including production. It now links to hgdownload.gi.ucsc.edu/downloads.html, matching the two other download links already on this page, and the sentence loses the stray period it had before the parenthetical. refs #37764 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> diff --git src/hg/htdocs/store.html src/hg/htdocs/store.html index 3c2ecbacff2..cd3b57e7686 100755 --- src/hg/htdocs/store.html +++ src/hg/htdocs/store.html @@ -77,31 +77,31 @@ <div class="product-includes"> <strong>Product includes:</strong><br> <ul> <li>A complete set of the cgi-bin files, HTML files, Javascript files, and database files needed to run a stock version of the UCSC Genome Browser.</li> <li>A complete set of source files required to build the UCSC Genome Browser, including .c and .h files, Javascript files, HTML files, makefiles, include files, libraries, database files, and instructions for building the UCSC Genome Browser from source.</li> <li>Installation instructions, including system requirements.</li> <li>A complete set of online user documentation (HTML format).</li> </ul> </div> <div class="product-not_includes"> <strong>Product does not include:</strong><br> <ul> <li>Source or executables for the Blat Search tool.</li> -<li>Genomic sequence or annotation data (this data may be freely downloaded from the UCSC Genome Browser website. (http://genome.ucsc.edu/downloads.html) or from many other publicly available sources on the internet, with restrictions outlined in the README files that accompany the data).</li> +<li>Genomic sequence or annotation data (this data may be freely downloaded from the <a href="https://hgdownload.gi.ucsc.edu/downloads.html" target="_blank">UCSC Genome Browser downloads page</a> or from many other publicly available sources on the internet, with restrictions outlined in the README files that accompany the data).</li> <li>The supporting software required to build, install and run the UCSC Genome Browser (e.g., C compilation environment, Apache server, MariaDB).</li> </ul> </div> </div> </td> </tr> </table> @@ -293,31 +293,31 @@ <strong><span style="color:red">Cost for non-profit academic research use:</span></strong> Free<br> </div> <div class="product-version"> <div class="product-size"> <strong>Size:</strong> 68.4 KB </div> <div class="product-requirements"> <strong>System Requirements:</strong><br> The GBiC program will run on most Debian or RedHat based Linux operating systems, however there are a few additional considerations: <ul> <li>Your network firewall must allow connections on the following ports: <ul> -<li>Port 3306, used by MySQL/MariaDB. Without this, only locally <a href="http://genome.ucsc.edu/goldenPath/help/gbic.html#the-gbic-commands" target="_blank">mirrored tracks</a> are shown.</li> +<li>Port 3306, used by MySQL/MariaDB. Without this, only locally <a href="goldenPath/help/gbic.html#the-gbic-commands" target="_blank">mirrored tracks</a> are shown.</li> <li>TCP port 873/9000, used by rsync/<a href="https://github.com/LabAdvComp/UDR" target="_blank">UDR</a>. Without this, you cannot download the software or track data.</li> </ul></li> </li>The GBiC product installs <a href="http://httpd.apache.org" target="_blank">Apache</a> and <a href="http://dev.mysql.com" target="_blank">MySQL</a>/<a href="https://mariadb.org/" target="_blank">MariaDB</a>. Please follow the links to determine if you have the correct license for each of these open source programs.</li> <li>The tool has been tested on Ubuntu 18/20/22/24 LTS, Rocky 9.5, and Fedora 30/35/41. Other Linux distributions have not been tested yet and may not work correctly. </li> <li>The utility has been tested on virtual machines in Amazon’s EC2 and Microsoft’s Azure. Other cloud providers will likely work, but have not been tested.</li> <li>The minimum amount of disk space needed to load all data from UCSC on-the-fly is about 5GB, although temporary files will accumulate quickly after normal usage and take up more space. In order to fully mirror the hg19 assembly database locally, approximately 10TB of disk space is needed, however most other organism databases are significantly smaller -- in the 5-10GB range -- plus around 40GB for associated GenBank data. This GenBank data will only be downloaded once. </li> <li>Around 4GB of memory is required to display all of chromosome 1 on hg19. Most other assemblies will require significantly less memory.</li> </ul> </div> <div class="product-includes"> <strong>Product includes:</strong><br> <ul>