c8e8fc540646df02203db3233f927e10fc7630d2 mspeir Wed Sep 23 15:55:37 2026 -0700 Conservation track descriptions: stop wrapping the download list in a <p>, refs #34803 A <ul> is not allowed inside a <p>, so the </p> that followed each download list was parsed as an implicit empty paragraph and thrown away. Close the paragraph after the lead-in sentence instead, and leave the list at the same level as the other paragraphs. 113 pages, one moved </p> each. Nothing renders differently; HTML Tidy goes from 226 warnings on these sections to none. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> diff --git src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html index 0ff656a27b9..cfd60505772 100644 --- src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html +++ src/hg/makeDb/trackDb/bacteria/staAur2/cons369way.html @@ -2164,39 +2164,39 @@ </p> <h2>Data Access</h2> <p> The alignments and the conservation scores can be retrieved for a single region or for a list of regions with the <a href="hgTables?db=staAur2&hgta_group=compGeno&hgta_track=cons369way">Table Browser</a>, which returns the alignments in MAF format and the scores as wiggle data. The conservation scores, though not the alignments, can also be joined with other annotations in the <a href="hgIntegrator?db=staAur2">Data Integrator</a>. For automated access, our <a href="../goldenPath/help/api.html">REST API</a> serves the alignment and conservation tracks individually, by name. </p> <p> Downloads for data in this track are available: +</p> <ul> <li> <a href="https://hgdownload.soe.ucsc.edu/goldenPath/staAur2/multiz369way/" target="_blank">Multiz alignments</a> (MAF format), and phylogenetic trees <li> <a href="https://hgdownload.soe.ucsc.edu/goldenPath/staAur2/phyloP369way/" target="_blank">PhyloP conservation</a> (WIG format) <li> <a href="https://hgdownload.soe.ucsc.edu/goldenPath/staAur2/phastCons369way/" target="_blank">PhastCons conservation</a> (WIG format) </ul> -</p> <p> Genome-wide alignment files are large. Among our command-line programs, <tt>mafsInRegion</tt>, <tt>mafSpeciesSubset</tt> and <tt>mafFrags</tt> pull out a region, a subset of species, or the alignment underlying a gene. They can be downloaded from the <a href="https://hgdownload.soe.ucsc.edu/admin/exe/" target="_blank">utilities directory</a>, and each one prints its usage when run with no arguments. See our <a href="../FAQ/FAQdownloads.html">Data Access FAQ</a> for more information. </p> <h2>Credits</h2> <p> This track was created using the following programs: <ul> <li> Alignment tools: lastz (formerly blastz) and multiz by Minmei Hou, Scott Schwartz and Webb Miller of the <a href="http://www.bx.psu.edu/miller_lab/" target="_blank">Penn State Bioinformatics Group</a>