7a820a27de93e79180f99ae0e149585b5d1bb126
mspeir
  Tue Dec 23 16:02:10 2025 -0800
adding better species coloring description to rest of conservation tracks, refs #27217

diff --git src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
index 78d3def6034..e4a738c5b42 100644
--- src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
+++ src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
@@ -81,30 +81,32 @@
 <li><span style="color: #ff0000; font-weight: bold;">Red</span> blocks are
 drawn when a polymorphism in a coding region results in a change in the amino
 acid that is generated.</li>
 <li><span style="color: #00ff00; font-weight: bold;">Green</span> blocks are
 drawn when a polymorphism in a coding region results in no change to the amino
 acid that is generated.</li>
 <li><span style="color: #0000ff; font-weight: bold;">Blue</span> blocks are
 drawn when a polymorphism is outside a coding region.</li>
 <li><span style="color: #cccc33; font-weight: bold;">Pale yellow</span> blocks
 are drawn when there are no aligning bases to that region in the reference
 genome.</li>
 </ul>
 <P>
 Checkboxes on the track configuration page allow selection of the
 species to include in the pairwise display.
+The names of selected species are colored according to their clade,
+alternating between blue and green.
 Configuration buttons are available to select all of the species
 (<EM>Set all</EM>), deselect all of the species (<EM>Clear all</EM>), or
 use the default settings (<EM>Set defaults</EM>).
 <P>
 To view detailed information about the alignments at a specific
 position, zoom the display in to 30,000 or fewer bases, then click on
 the alignment.</P>
 
 <H3>Base Level</H3>
 <P>
 When zoomed-in to the base-level display, the track shows the base
 composition of each alignment.
 The numbers and symbols on the Gaps
 line indicate the lengths of gaps in the $Organism sequence at those
 alignment positions relative to the longest non-$Organism sequence.