') + w('People running their own copy of the Genome Browser ask us three questions often') + w('enough that it is worth answering them in one place: which tracks we are not allowed') + w('to pass on, which tracks change on their own, and which tracks were built by someone') + w('other than UCSC. This page is rebuilt automatically, so it reflects the current state') + w('of our servers rather than a hand-kept list.') + w('

Tracks we cannot redistribute

') + w('These tracks reach us under terms that let us display the data but not pass it on.') + w('You can see them on our site, and in most cases you can obtain the same data yourself') + w('directly from the group that produced it, but we cannot include them in a mirror or on') + w('our download server. The reasons vary: some are commercial licences, others are') + w('consent agreements attached to human cohorts. Check the description page of an') + w('individual track for who to approach about access.') + w('

How this list is put together

Track	Table or track name	Assemblies
%s	`%s`	%s	%s
`%s`

') + w('A track appears above if any of three things is true of it: its configuration says') + w('tableBrowser off; its noGenomeReason refers to distribution') + w('terms, which is how OMIM is marked and is missed by a search for the first setting') + w('alone; or its table exists on our servers but is deliberately absent from the download') + w('server. No single one of those catches everything, so all three are checked. Note that') + w('some tracks are withheld from whole-genome Table Browser queries only because they are') + w('too large to return, not for any licensing reason, and those are not listed above.') + w('

The list above is cross-checked against the download server every " - "time this page is built, so that a track marked as restricted here is " - "actually blocked there. Discrepancies are reported to us privately " - "rather than shown on this page.

Reachable on hgdownload

') + w('%d file(s) marked as restricted are currently served by the download server and' + % len(exposed)) + w('need to be added to its exclude list.') + w('

Every file marked as restricted is correctly blocked on " - "hgdownload. Checked on %s.

') + w('Every track named above is checked against the download server each time this page') + w('is rebuilt, so that a track listed as restricted is genuinely blocked there.') + w('

Tracks that update themselves

') + w('These tracks are rebuilt on a schedule without anyone at UCSC touching them. If you') + w('mirror them, your copy will drift from ours until you synchronise again. Times are US') + w('Pacific.') + w('

Scheduled checks that change no data

') + w('These watch for new releases upstream and send us mail. They update nothing on') + w('their own, and are listed so that the schedule above is not mistaken for the whole') + w('picture.') + w('

Track	Assembly	Path
`%s`

- -

Which tracks you can mirror, which update themselves, and which came from outside

Generated {esc(today)} from the hgwbeta trackDb, the otto crontab, and the -GenArk build tree · Redmine -#37781

- -

People running their own copy of the Genome Browser ask us three questions often enough that -it is worth answering them in one place: which tracks we are not allowed to pass on, which tracks -change on their own, and which tracks were built by someone other than UCSC.

- -

1. Tracks we cannot redistribute

These come to us under terms that let us display the data but not hand it on. You can see them -on our site, and in most cases you can get the same data yourself directly from the group that -produced it, but we cannot include them in a mirror or on the download server. The reasons vary: -some are commercial licences, some are consent agreements attached to human cohorts.

- -{''.join(rows1)} -

Track	Table or track name	Assemblies	How it is marked

A track is listed here if any of these is true: its trackDb entry says -tableBrowser off; its noGenomeReason mentions distribution terms (this -is how OMIM is marked, and it is missed by a query that only looks for off); or its -table exists on our servers but is deliberately absent from hgdownload. No single one of those -catches everything, so the page checks all three.

- -

Cross-check against the download server

-{exposed_html} - -

2. Tracks that update themselves

These are refreshed on a schedule without anyone touching them, by the process we call otto. -If you mirror them, they will drift from our copy unless you re-sync. The times are US Pacific.

- -{rows2} -

Source	Runs	Tracks it updates	Assemblies

- -

Scheduled checks that do not change data

These watch for new releases upstream and email us; they update nothing on their own.

- -{rows2b} -

Job	Runs	What it checks

A further {len(infra)} otto jobs handle pushes, mirrors, logs and other -housekeeping rather than track data, so they are left out here. -{('' + str(len(unc)) + ' job(s) could not be classified and need a look.') if unc else ''}

- -

3. Contributed tracks

Some GenArk assemblies carry annotation built by outside groups rather than by us. The data -sits alongside our own tracks but the group named below produced it, and questions about the -underlying annotation are best sent to them.

- -{rows3} -

Contributor	Assemblies

{contrib_total} assembly/contributor pairings across -{len(contrib)} contributing groups.

- -

-Built by collect.py and mkPage.py · sources: hgwbeta trackDb -({d['counts'].get('databases','?')} databases), ~/kent/src/hg/utils/otto/otto.crontab, -/gbdb/genark/*/contrib/, and live checks against hgdownload. -

Contributed tracks

') + w('Some assemblies in our') + w('GenArk collection') + w('carry annotation built by outside groups rather than by UCSC. The data sit alongside') + w('our own tracks, but the group named below produced them, and questions about the') + w('underlying annotation are best sent to that group.') + w('

') + w('%d assemblies carry contributed annotation, from %d groups.' + % (sum(c["assemblies"] for c in contrib), len(contrib))) + w('

') + w('This page was generated on %s from the current state of our servers.' % esc(today)) + w('

Track lists: redistribution, automatic updates and contributed data

Contents

Tracks we cannot redistribute

Tracks that update themselves

Contributed tracks

Tracks we cannot redistribute

How this list is put together

Reachable on hgdownload

Tracks that update themselves

Scheduled checks that change no data

Which tracks you can mirror, which update themselves, and which came from outside

1. Tracks we cannot redistribute

Cross-check against the download server

2. Tracks that update themselves

Scheduled checks that do not change data

3. Contributed tracks

Contributed tracks