b781052c921172ea50522fb2dac418337c79fd83 braney Mon Jun 23 09:38:53 2025 -0700 don't filter on 'm' for bedMethyl diff --git src/hg/hgTracks/simpleTracks.c src/hg/hgTracks/simpleTracks.c index 4512b281ad6..d275657ec0f 100644 --- src/hg/hgTracks/simpleTracks.c +++ src/hg/hgTracks/simpleTracks.c @@ -12160,31 +12160,31 @@ /* Load up bedMethyl type tracks */ { struct customTrack *ct = tg->customPt; char *table = tg->table; struct sqlConnection *conn; if (ct == NULL) conn = hAllocConn(database); else { conn = hAllocConn(CUSTOM_TRASH); table = ct->dbTableName; } struct dyString *query = sqlDyStringCreate("select * from %s where ", table); hAddBinToQuery(winStart, winEnd, query); // for the moment we're only loading the 'm's and not the 'h's -sqlDyStringPrintf(query, "chrom = '%s' and chromStart < %d and chromEnd > %d and name = 'm'", +sqlDyStringPrintf(query, "chrom = '%s' and chromStart < %d and chromEnd > %d", chromName, winEnd, winStart); tg->items = bedMethylLoadByQuery(conn, query->string); hFreeConn(&conn); } void loadPgSnp(struct track *tg) /* Load up pgSnp (personal genome SNP) type tracks */ { struct customTrack *ct = tg->customPt; char *table = tg->table; struct sqlConnection *conn; if (ct == NULL) conn = hAllocConn(database); else @@ -12244,31 +12244,31 @@ { if (isCenterLabelIncluded(tg)) yOff += mgFontLineHeight(font); hvGfxTextRight(hvg, leftLabelX, yOff, leftLabelWidth-1, tg->lineHeight, color, font, tg->shortLabel); } } void bedMethylMethods (struct track *tg) /* bedMethyl track methods */ { bedMethods(tg); tg->loadItems = loadBedMethyl; tg->itemColor = bedMethylColor; tg->mapItem= bedMethylMapItem; -tg->canPack = TRUE; +tg->tdb->canPack = TRUE; } void pgSnpMethods (struct track *tg) /* Personal Genome SNPs: show two alleles with stacked color bars for base alleles and * (if available) allele counts in mouseover. */ { bedMethods(tg); tg->loadItems = loadPgSnp; tg->freeItems = freePgSnp; tg->totalHeight = pgSnpHeight; tg->itemName = pgSnpName; tg->drawItemAt = pgSnpDrawAt; tg->mapItem = pgSnpMapItem; tg->nextItemButtonable = TRUE; tg->nextPrevItem = linkedFeaturesLabelNextPrevItem;