2bc4d4c29bb6270454b0945bb475f1b78bea0e08
braney
  Thu Jul 10 15:43:34 2025 -0700
some boiler plate for bedMethyl doc

diff --git src/hg/htdocs/goldenPath/help/customTrackText.html src/hg/htdocs/goldenPath/help/customTrackText.html
index 8c6941babf6..f2a2506ed07 100755
--- src/hg/htdocs/goldenPath/help/customTrackText.html
+++ src/hg/htdocs/goldenPath/help/customTrackText.html
@@ -49,40 +49,30 @@
 To construct an annotation file and display it in the Genome Browser, follow these steps:</p>
 
 <a name="format"></a>
 <p>
 <strong>Step 1. Format the data set</strong><br>
 Format your data as a tab-separated file using one of the
 <a href="/FAQ/FAQformat.html" target="_blank">formats supported</a> by the Genome
 Browser. You may include more than one data set in your
 annotation file; these need not be in the same format. For many formats,
 chromosome names can either be UCSC-style names (e.g. 'chr1', 'chrX')
 or <a href="/FAQ/FAQcustom.html#custom12">aliases</a> from other sources (e.g.
 '1' or 'NC_000001.11'). Annotation data can be in a format designed
 specifically for the Human Genome Project or UCSC Genome Browser, including:
 <div class="container">
   <div class="row">
-    <div class="col-xs-12 col-sm-6 col-md-2">
-      <ul>
-        <li><a href="bedgraph.html">bedGraph</a>
-        <li><a href="/FAQ/FAQformat.html#format4">GTF</a> and
-            <a href="/FAQ/FAQformat.html#format3">GFF</a>
-        <li><a href="/FAQ/FAQformat.html#format2">PSL</a>
-        <li><a href="/FAQ/FAQformat.html#format1">BED</a>
-        <li><a href="wiggle.html">WIG</a>
-      </ul>
-    </div>
     <div class="col-xs-12 col-sm-6 col-md-2">
       <ul>
         <li><a href="bigBed.html">bigBed</a></li>
         <li><a href="bigGenePred.html">bigGenePred</a>
         <li><a href="bigNarrowPeak.html">bigNarrowPeak</a>
         <li><a href="bigMaf.html">bigMaf</a>
         <li><a href="bigChain.html">bigChain</a>
       </ul>
     </div>
     <div class="col-xs-12 col-sm-6 col-md-2">
       <ul>
         <li><a href="bigPsl.html">bigPsl</a>
         <li><a href="barChart.html">barChart</a>
         <li><a href="barChart.html">bigBarChart</a>
         <li><a href="interact.html">interact</a>
@@ -97,30 +87,31 @@
         <li><a href="vcf.html">VCF</a>
         <li><a href="/FAQ/FAQformat.html#format5">MAF</a>
       </ul>
     </div>
     <div class="col-xs-12 col-sm-6 col-md-2">
       <ul>
         <li><a href="../../FAQ/FAQformat.html#format1.7">BED detail</a>
         <li><a href="../../FAQ/FAQformat.html#format10">Personal Genome SNP</a>
         <li><a href="../../FAQ/FAQformat.html#format13">broadPeak</a>
       </ul>
     </div>
     <div class="col-xs-12 col-sm-6 col-md-2">
       <ul>
         <li><a href="../../FAQ/FAQformat.html#format12">narrowPeak</a>
         <li><a href="../../FAQ/FAQformat.html#format6.5">microarray</a> (BED15)
+        <li><a href="bedMethyl.html">bedMethyl</a>
       </ul>
     </div>
   </div>
 </div>
 <p>
 <em>
 NOTE: Some annotations need to be hosted remotely in a web-accessible location that support byte-range
 requests to be visualized on the UCSC Genome Browser, such as: bigBed, bigWig, BAM, VCF, etc.
 For examples of how to host your custom track data remotely, please refer to the track hub user
 guide, &quot;<a href="/goldenPath/help/hgTrackHubHelp.html#Hosting" target="_blank">Where to host
 your data?</a>&quot;.</em>
 </p>
 <p>
 <strong>Step 2. Define the Genome Browser display characteristics</strong><br>
 Add one or more optional <a href="#BROWSER">browser lines</a> to the beginning of the data