da5180baf458d64d523ec4e1cd96166bac1d3b25 braney Sat Aug 1 12:05:20 2026 -0700 urlCommandCatalog: let --reconcile fail, so it can run nightly refs #37923 reconcile ended in a bare return 0, so it could not fail whatever it found, and it printed a six hundred line name diff every run. Most of that diff is structural rather than drift: the catalog covers what a user can put on a browser URL, while the harvester sees every cgiOptionalString in the tree, including form fields and the arguments of small utility CGIs. So the gap is now recorded in urlNamesNotCataloged.txt and reconcile reports only a name in neither the catalog nor that file, plus any disagreement between a persists=False claim and what the tree actually excludes or removes, in either direction. That second half was already computed and thrown away in a summary line. --update-baseline regenerates the file so accepting a name out of scope is a reviewable diff rather than a hand edit. The baseline's first version was accepted wholesale and says so, except for blatNewPage and blatReopen, which the new BLAT results page puts on a URL and which are now cataloged properly. A scan that finds almost nothing fails rather than reporting all clear, and KENT_SRC lets a nightly aim at a pristine checkout. diff --git src/hg/utils/urlCommandCatalog/urlNamesNotCataloged.txt src/hg/utils/urlCommandCatalog/urlNamesNotCataloged.txt new file mode 100644 index 00000000000..b72343a9731 --- /dev/null +++ src/hg/utils/urlCommandCatalog/urlNamesNotCataloged.txt @@ -0,0 +1,525 @@ +# urlNamesNotCataloged.txt - CGI variable names the tree reads that +# urlCommandCatalog.py deliberately does not describe: form fields, debug +# switches, and the arguments of utility CGIs that are not browser URL +# parameters. Refs #37923. +# +# urlCommandCatalog.py --reconcile complains about any name in neither the +# catalog nor this file, so this is what keeps a nightly run quiet until +# something actually changes. Regenerate with --update-baseline, then read the +# diff before committing: a name appearing here is a decision that it does not +# belong on a URL, and a name disappearing means its read went away. +# +# The first version of this file was accepted wholesale, as a snapshot of the +# gap on the day reconcile learned to fail. So a name being in here is not +# evidence that anybody has looked at it; only the ones added since, which +# arrive a few at a time in a reviewable diff, carry that weight. +# +# The comment on each line is the file that reads it, as a hint for whoever +# reviews the next change to this file. Names under hg/hgTracks, hg/hgc, +# hg/hgTrackUi, hg/hgTables and hg/lib are worth a second look, since those are +# the CGIs whose parameters the catalog is supposed to cover. +DownloadFormat # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +FILE # hg/secure/secure.c +Invert # hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c +JKSQL_PROF # lib/cheapcgi.c +JKSQL_TRACE # lib/cheapcgi.c +RTDBSubmit # hg/rtdbWebUpdate/rtdbWebUpdate.c +SUBMIT # hg/secure/secure.c +Submit # hg/hgCustom/hgCustom.c +TextArea # hg/gigAssembler/ooGreedy/protDust/protDust.c +_action # hg/qaPushQ/qaPushQ.c +aaOrigOffset # hg/protein/lib/doTracks.c +abbr # hg/mouseStuff/subsetTraces/subsetTraces.c +acc # hg/cirm/cdw/cdwGetFile/cdwGetFile.c +accession # hg/encode3/encodeDataWarehouse/edwWebXSendFile/edwWebXSendFile.c +add # hg/makeDb/outside/hgPhMouse/hgPhMouse.c +addExt # hg/cirm/cdw/cdwGetFile/cdwGetFile.c +agxPrintEdges # hg/hgc/hgc.c +allGenomes # hg/hgBlat/hgBlat.c +allPoints # hg/altSplice/affySplice/spliceProbeVis.c +allowBox # hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c +altFile # hg/uniqSize/uniqSize.c +assertion # hg/encode3/encodeDataWarehouse/edwWebAuthLogin/edwWebAuthLogin.c +assumesHub # hg/lib/hubConnect.c +backgroundStatus # hg/hgSession/hgSession.c +basePct # hg/affyGnf/pslAffySelect.c +bedFile # hg/affyTransciptome/samplesForCoordinates.c +bgcolor # hg/encode/hgEncodeVocab/hgEncodeVocab.c +bouncebutton # hg/qaPushQ/qaPushQ.c +boxDown # hg/wikiPlot/wikiPlot.c +boxDownLeft # hg/wikiPlot/wikiPlot.c +boxDownRight # hg/wikiPlot/wikiPlot.c +boxLeft # hg/wikiPlot/wikiPlot.c +boxOut # hg/wikiPlot/wikiPlot.c +boxRight # hg/wikiPlot/wikiPlot.c +boxUp # hg/wikiPlot/wikiPlot.c +boxUpLeft # hg/wikiPlot/wikiPlot.c +boxUpRight # hg/wikiPlot/wikiPlot.c +breakUp # hg/getFeatDna/getFeatDna.c +c # hg/hgc/cgapSageClick.c +cEnd # hg/hgc/hgc.c +cStart # hg/hgc/hgc.c +calledSelf # hg/hgCoordConv/hgCoordConv.c +cancelbutton # hg/qaPushQ/qaPushQ.c +cartDump.metaDataId # hg/cartDump/cartDump.c +cartDump.newValue # hg/cartDump/cartDump.c +cartDump.varName # hg/cartDump/cartDump.c +caseChoice # hg/gigAssembler/ooGreedy/protDust/protDust.c +cb # hg/qaPushQ/qaPushQ.c +cdwBrowseFiles_facet_fieldName # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cdwBrowseFiles_facet_fieldVal # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cdwBrowseFiles_facet_op # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cdwCommand # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cdwDownloadName # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cdwQuery # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +cgiSpoof # hg/hgCollection/hgCollection.c +cgis # hg/qaPushQ/qaPushQ.c +check # hg/pslCat/pslCat.c +checkImre # hg/gigAssembler/cmParse/cmParse.c +checkUs # hg/gigAssembler/checkYbr/checkYbr.c +chromEnd # hg/getFeatDna/getFeatDna.c +chromStart # hg/getFeatDna/getFeatDna.c +ci # hg/hgc/hgc.c +clearRestriction # hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c +clonebutton # hg/qaPushQ/qaPushQ.c +col # hg/qaPushQ/qaPushQ.c +colName # hg/qaPushQ/qaPushQ.c +contigDir # hg/wikiPlot/wikiPlot.c +cost # hg/pslFilterBadCdna/pslFilterBadCdna.c +ct_ # hg/lib/customTrack.c +date # hg/encode3/encodeDataWarehouse/edwWebXSendFile/edwWebXSendFile.c +dbs # hg/qaPushQ/qaPushQ.c +defaultsSet # hg/lib/cart.c +delbutton # hg/qaPushQ/qaPushQ.c +deprecated # hg/encode/hgEncodeVocab/hgEncodeVocab.c +description # hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c +descriptionOnly # hg/hgTrackUi/hgTrackUi.c +destination # hg/cartReset/cartReset.c +diagnostics # hg/liftAgp/liftAgp.c +dir # hg/pslFilterBadCdna/pslFilterBadCdna.c +dirs # hg/pslFilterBadCdna/pslFilterBadCdna.c +dnaLines # hg/gigAssembler/ooGreedy/primeMate/primeMate.c +do.suggestSendMail # hg/hgUserSuggestion/hgUserSuggestion.c +doAll # hg/affyTransciptome/avgTranscriptomeExps.c +doQuickLift # hg/hgConvert/hgConvert.c +docId # hg/encode/docId/docIdView/docIdView.c +dots # hg/mouseStuff/libScan/libScan.c +dup_ # hg/lib/dupTrack.c +dupes # hg/gigAssembler/ooWeedZero/ooWeedZero.c +elia # hg/makeDb/outside/hgExonerate/hgExonerate.c +endIntron # hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c +endRange # hg/gigAssembler/ooGreedy/getgene/getgene.c +estPrior # hg/altSplice/altSplice/spliceStats.c +exact # hg/hgSuggest/hgSuggest.c +exampleButton # hg/hgPhyloPlace/hgPhyloPlace.c +exe # hg/sim4big/sim4big.c +ext # hg/pslCat/pslCat.c +faFile # hg/altSplice/altSplice/spliceStats.c +fasta # hg/hgc/pubs.c +file # hg/secure/secure.c +fileList # hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c +fixMembers # hg/hgLogin/hgLogin.c +foot # hg/hgc/interactClick.c +fpcChrom # hg/gigAssembler/ooLiftSpec/ooLiftSpec.c +fromProg # hg/gisaid/gisaidTable/gisaidTable.c +gapOpenCost # hg/pslFilterBadCdna/pslFilterBadCdna.c +gapSizeLogMod # hg/pslFilterBadCdna/pslFilterBadCdna.c +gene # hg/hgGtexApi/hgGtexApi.c +geneName # hg/gigAssembler/ooGreedy/getgene/getgene.c +genomeInput # hg/hubApi/list.c +gisaidTable.as. # hg/gisaid/gisaidTable/advFilter.c +gisaidTable.asi. # hg/gisaid/gisaidTable/advFilter.c +gisaidTable.col. # hg/gisaid/gisaidTable/configure.c +gisaidTable.colOrder # hg/gisaid/gisaidTable/configure.c +gisaidTable.do. # hg/gisaid/gisaidTable/gisaidTable.c +gisaidTable.do.keyClear. # hg/gisaid/gisaidTable/advFilter.c +gisaidTable.do.keyPaste. # hg/gisaid/gisaidTable/advFilter.c +gisaidTable.do.keyPasted. # hg/gisaid/gisaidTable/advFilter.c +gisaidTable.do.keyUp. # hg/gisaid/gisaidTable/advFilter.c +goldName # hg/gigAssembler/ooLiftSpec/ooLiftSpec.c +gpFile # hg/affyTransciptome/samplesForCoordinates.c +gsToken # hg/hgTables/genomeSpace.c +gsidM_newPassword # hg/gsid/gsidMember/gsidMember.c +gsidM_password # hg/gsid/gsidMember/gsidMember.c +gsidMember.do. # hg/gsid/gsidMember/gsidMember.c +gsidTable.do. # hg/gsid/gsidTable/gsidTable.c +haplotypes_distMinor # hg/hgGene/alleles.c +hc_one_url # hg/hgHubConnect/hgHubConnect.c +hgLogin.do. # hg/hgLogin/hgLogin.c +hgLogin_changeRequired # hg/hgLogin/hgLogin.c +hgLogin_email # hg/hgLogin/hgLogin.c +hgLogin_email2 # hg/hgLogin/hgLogin.c +hgLogin_helpWith # hg/hgLogin/hgLogin.c +hgLogin_newPassword1 # hg/hgLogin/hgLogin.c +hgLogin_newPassword2 # hg/hgLogin/hgLogin.c +hgLogin_password # hg/hgLogin/hgLogin.c +hgLogin_password2 # hg/hgLogin/hgLogin.c +hgLogin_sendMailContain # hg/hgLogin/hgLogin.c +hgLogin_sendMailTo # hg/hgLogin/hgLogin.c +hgLogin_userName # hg/hgLogin/hgLogin.c +hgS_delete_ # hg/hgSession/hgSession.c +hgS_do # hg/hgSession/hgSession.c +hgS_doDownload_ # hg/hgSession/hgSession.c +hgS_edit_ # hg/hgSession/hgSession.c +hgS_gallery_ # hg/hgSession/hgSession.c +hgS_loadLocalFileName # hg/hgSession/hgSession.c +hgS_load_ # hg/hgSession/hgSession.c +hgS_makeDownload_ # hg/hgSession/hgSession.c +hgS_newSessionName # hg/hgSession/hgSession.c +hgS_newSessionShare # hg/hgSession/hgSession.c +hgS_oldSessionName # hg/hgSession/hgSession.c +hgS_otherUserSessionLabel # hg/hgTracks/hgTracks.c +hgS_saveLocalBackupFileName # hg/hgSession/backup.c +hgS_shareAnon # hg/hgSession/hgSession.c +hgS_share_ # hg/hgSession/hgSession.c +hgS_showDownload_ # hg/hgSession/hgSession.c +hgSeq.casing # hg/cgilib/hgSeq.c +hgSeq.cdsExon # hg/cgilib/hgSeq.c +hgSeq.downstream # hg/cgilib/hgSeq.c +hgSeq.downstreamSize # hg/cgilib/hgSeq.c +hgSeq.granularity # hg/cgilib/hgSeq.c +hgSeq.intron # hg/cgilib/hgSeq.c +hgSeq.padding3 # hg/cgilib/hgSeq.c +hgSeq.padding5 # hg/cgilib/hgSeq.c +hgSeq.promoter # hg/cgilib/hgSeq.c +hgSeq.promoterSize # hg/cgilib/hgSeq.c +hgSeq.repMasking # hg/cgilib/hgSeq.c +hgSeq.revComp # hg/cgilib/hgSeq.c +hgSeq.splitCDSUTR # hg/cgilib/hgSeq.c +hgSeq.utrExon3 # hg/cgilib/hgSeq.c +hgSeq.utrExon5 # hg/cgilib/hgSeq.c +hgTest # hg/hgCoordConv/hgCoordConv.c +hgTrackUi_op # hg/hgTrackUi/hgTrackUi.c +hgb.pasteKeys # hg/hgBatch/hgBatch.c +hgb.showPasteResults # hg/hgBatch/hgBatch.c +hgb.showUploadResults # hg/hgBatch/hgBatch.c +hgb.uploadKeys # hg/hgBatch/hgBatch.c +hgb.userKeys # hg/hgBatch/hgBatch.c +hgbi_do # hg/bioImage/hgBioImage/hgBioImage.c +hgcd_term # hg/hgChooseDb/hgChooseDb.c +hgct_ # hg/hgCustom/hgCustom.c +hgct_docFile__binary # hg/lib/customTrack.c +hgdbTestDb # hg/affyTransciptome/samplesForCoordinates.c +hgdbTestTable # hg/affyTransciptome/bulkChr2XRegression.c +hgfs_Search # hg/hgFileSearch/hgFileSearch.c +hgg_do # hg/hgGenome/hgGenome.c +hgg_doPsOutput # hg/hgGenome/hgGenome.c +hgg_do_ # hg/hgGene/hgGene.c +hgg_uploadFile # hg/hgGenome/upload.c +hglft_fromDb # hg/hgLiftOver/hgLiftOver.c +hgp_do # hg/visiGene/hgVisiGene/hgVisiGene.c +hgp_doDownload # hg/visiGene/hgVisiGene/hgVisiGene.c +hgp_id # hg/visiGene/hgVisiGene/hgVisiGene.c +hgp_listSpec # hg/visiGene/hgVisiGene/hgVisiGene.c +hgp_ss # hg/visiGene/hgVisiGene/hgVisiGene.c +hgp_startAt # hg/visiGene/hgVisiGene/hgVisiGene.c +hgpp_serverCommand # hg/hgPhyloPlace/hgPhyloPlace.c +hgpp_serverComment # hg/hgPhyloPlace/hgPhyloPlace.c +hgpp_serverPlain # hg/hgPhyloPlace/hgPhyloPlace.c +hgpp_serverSalty # hg/hgPhyloPlace/hgPhyloPlace.c +hgs_sample # hg/gisaid/gisaidSample/gisaidSample.c +hgs_subj # hg/gisaid/gisaidSubj/gisaidSubj.c +hgself # hg/oneShot/testCart/cart.c +hgt.customFile__binary # hg/lib/customTrack.c +hgt.customFile__filename # hg/hgCustom/hgCustom.c +hgt_configGroupTarget # hg/hgTracks/config.c +hgt_doConfigHideAll # hg/hgTracks/hgTracks.c +hgt_doConfigHideAllGroups # hg/hgTracks/hgTracks.c +hgt_doConfigHideEncodeGroups # hg/hgTracks/hgTracks.c +hgt_doConfigShowAll # hg/hgTracks/hgTracks.c +hgt_doConfigShowAllGroups # hg/hgTracks/hgTracks.c +hgt_doConfigShowEncodeGroups # hg/hgTracks/hgTracks.c +hgt_doDefaultShowAll # hg/hgTracks/hgTracks.c +hgt_doJsCommand # hg/hgTracks/hgTracks.c +hgta_corrMaxLimitCount # hg/lib/web.c +hgta_corrWinSize # hg/lib/web.c +hgta_correlateGroup # hg/lib/web.c +hgta_correlateOp # hg/lib/web.c +hgta_correlateTable # hg/lib/web.c +hgta_correlateTrack # hg/lib/web.c +hgta_ctDesc # hg/hgTables/bedList.c +hgta_ctName # hg/hgTables/bedList.c +hgta_ctUrl # hg/hgTables/bedList.c +hgta_ctVis # hg/hgTables/bedList.c +hgta_do # hg/hgTables/hgTables.c +hgta_enteredUserRegionFile # hg/hgTables/userRegions.c +hgta_enteredUserRegions # hg/hgIntegrator.c +hgta_fieldSelectTable # hg/hgTables/filterFields.c +hgta_fil. # hg/hgTables/filterFields.c +hgta_filterTable # hg/hgTables/filterFields.c +hgta_fs. # hg/hgTables/filterFields.c +hgta_gsPassword # hg/hgTables/genomeSpace.c +hgta_gsUser # hg/hgTables/genomeSpace.c +hgta_identifierDb # hg/hgTables/identifiers.c +hgta_identifierFile # hg/hgTables/identifiers.c +hgta_identifierTable # hg/hgTables/identifiers.c +hgta_nextCorrelateGroup # hg/lib/web.c +hgta_nextCorrelateOp # hg/lib/web.c +hgta_nextCorrelateTable # hg/lib/web.c +hgta_nextCorrelateTrack # hg/lib/web.c +hgta_nextSubtrackMerge # hg/hgTables/compositeTrack.c +hgta_pastedIdentifiers # hg/hgTables/identifiers.c +hgta_regionType # hg/hgTables/userRegions.c +hgta_subtrackMerge # hg/hgTables/compositeTrack.c +hgta_userRegionsDb # hg/hgIntegrator.c +hgta_userRegionsFile # hg/hgIntegrator.c +hideTracksOnConvert # hg/hgConvert/hgConvert.c +hiliteNear # hg/gigAssembler/ooGreedy/getgene/getgene.c +hpp_ref # hg/hgPhyloPlace/hgPhyloPlace.c +hubId # hg/lib/cart.c +idealTm # hg/gigAssembler/ooGreedy/primeMate/primeMate.c +imre # hg/gigAssembler/ooLiftSpec/ooLiftSpec.c +imreCheck # hg/gigAssembler/cmParse/cmParse.c +imreMerge # hg/gigAssembler/ooLiftSpec/ooLiftSpec.c +imreVsNa # hg/gigAssembler/cmParse/cmParse.c +in # hg/affyGnf/pslAffySelect.c +incFile # hg/hgMenubar/hgMenubar.c +intronsLowerCase # hg/gigAssembler/ooGreedy/getgene/getgene.c +intronsParenthesized # hg/gigAssembler/ooGreedy/getgene/getgene.c +invoice # hg/gsid/gsidMember/gsidMember.c +isProt # hg/hgc/hgc.c +key # hg/secure/secure.c +killTime # hg/gigAssembler/codJobs/jabba/jabba.c +l # hg/hgc/hgc.c +lab # hg/encode/docId/docIdView/docIdView.c +label # hg/encode/hgEncodeVocab/hgEncodeVocab.c +lastPosition # hg/lib/cart.c +lastVirtModeExtraState # hg/lib/web.c +lastVirtModeType # hg/lib/web.c +lib # hg/hgc/cgapSageClick.c +lift # hg/ctgToChromFa/ctgToChromFa.c +linesEvery # hg/gigAssembler/ooGreedy/protDust/protDust.c +litLink # hg/gigAssembler/ooGreedy/getgene/getgene.c +lockbutton # hg/qaPushQ/qaPushQ.c +main # hg/autoXml/autoXml.c +mapX # hg/wikiPlot/wikiPlot.c +mapY # hg/wikiPlot/wikiPlot.c +match # hg/cartDump/cartDump.c +maxBad # hg/gigAssembler/psLayout/psLayout.c +maxBadPpt # hg/pslFilterBadCdna/pslFilterBadCdna.c +maxPile # hg/pslUnpile/pslUnpile.c +maxPush # hg/gigAssembler/codJobs/jabba/jabba.c +maxQueue # hg/gigAssembler/codJobs/jabba/jabba.c +maxSubCount # hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c +md # hg/sageVisCGI/sageVisCGI.c +merge # hg/getFeatDna/getFeatDna.c +meta # hg/encode/docId/docIdView/docIdView.c +minAli # hg/pslFilterBadCdna/pslFilterBadCdna.c +minBases # hg/gigAssembler/psLayout/psLayout.c +minConf # hg/altSplice/altSplice/correlateWithExpression.c +minFlankingNum # hg/altSplice/altSplice/spliceStats.c +minFlankingSize # hg/altSplice/altSplice/spliceStats.c +minMatch # hg/pslFilterBadCdna/pslFilterBadCdna.c +minPercent # hg/altSplice/spliceWalk/spliceWalk.c +minPile # hg/pslUnpile/pslUnpile.c +minPush # hg/gigAssembler/codJobs/jabba/jabba.c +minScore # hg/pslFilterBadCdna/pslFilterBadCdna.c +minSize # hg/altSplice/altSplice/spliceStats.c +minUniqueMatch # hg/pslFilterBadCdna/pslFilterBadCdna.c +missOk # hg/ctgToChromFa/ctgToChromFa.c +monitor # hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c +month # hg/qaPushQ/qaPushQ.c +mrnaFilter # hg/altSplice/altSplice/spliceStats.c +mrnaFilterOff # hg/altSplice/spliceWalk/spliceWalk.c +mrnaWeight # hg/altSplice/spliceWalk/spliceWalk.c +muscle # hg/altSplice/affySplice/spliceProbeVis.c +namesOrIds # hg/hgPhyloPlace/hgPhyloPlace.c +near.customFile # hg/near/hgNear/customColumn.c +near.customFromUrl # hg/near/hgNear/customColumn.c +near.customPaste # hg/near/hgNear/customColumn.c +near.customUpload # hg/near/hgNear/customColumn.c +near.do. # hg/near/hgNear/hgNear.c +near.idPos # hg/near/hgNear/hgNear.c +near_search # hg/lib/web.c +newGenome # hg/hgCoordConv/hgCoordConv.c +newUser # hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c +nmerSize # hg/affyTransciptome/nmerAlign.c +noBin # hg/makeDb/hgLoadSample/hgLoadSample.c +noCleanup # hg/affyTransciptome/trackFromLifts.c +noHead # hg/pslUnpile/pslUnpile.c +noRefresh # hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c +noShort # hg/lib/hgFind.c +nohead # hg/pslCat/pslCat.c +numTests # hg/hgCoordConv/hgCoordConv.c +o # hg/hgc/cgapSageClick.c +oldPosition # hg/lib/web.c +oldTable # hg/makeDb/hgLoadSample/hgLoadSample.c +organism # hg/encode/hgEncodeVocab/hgEncodeVocab.c +origDb # hg/hgCoordConv/hgCoordConv.c +origGenome # hg/hgCoordConv/hgCoordConv.c +origPhase # hg/hgText/hgText.c +otherDb # hg/hgc/hgc.c +otherOrg # hg/hgc/hgc.c +out # hg/pslCat/pslCat.c +output # hg/affyTransciptome/mergeAffyFiles.c +outputType # hg/hgText/hgText.c +parentWigMaf # hg/hgc/hgc.c +password # hg/encode3/encodeDataWarehouse/lib/edwLib.c +path # hg/cirm/cdw/cdwGetFile/cdwGetFile.c +payment_date # hg/gsid/gsidMember/gsidMember.c +payment_gross # hg/gsid/gsidMember/gsidMember.c +payment_reason # hg/gsid/gsidMember/gsidMember.c +payment_status # hg/gsid/gsidMember/gsidMember.c +pbScale # hg/protein/lib/doTracks.c +pbScaleStr # hg/protein/lib/doTracks.c +pbt.dinkLL # hg/gsid/pbGsid/pbGsid.c +pbt.dinkLR # hg/gsid/pbGsid/pbGsid.c +pbt.dinkRL # hg/gsid/pbGsid/pbGsid.c +pbt.dinkRR # hg/gsid/pbGsid/pbGsid.c +pbt.hideAll # hg/gsid/pbGsid/pbGsid.c +pbt.in1 # hg/gsid/pbGsid/pbGsid.c +pbt.in2 # hg/gsid/pbGsid/pbGsid.c +pbt.in3 # hg/gsid/pbGsid/pbGsid.c +pbt.inBase # hg/gsid/pbGsid/pbGsid.c +pbt.left1 # hg/gsid/pbGsid/pbGsid.c +pbt.left2 # hg/gsid/pbGsid/pbGsid.c +pbt.left3 # hg/gsid/pbGsid/pbGsid.c +pbt.out1 # hg/gsid/pbGsid/pbGsid.c +pbt.out2 # hg/gsid/pbGsid/pbGsid.c +pbt.out3 # hg/gsid/pbGsid/pbGsid.c +pbt.psOutput # hg/gsid/pbGsid/pbGsid.c +pbt.reset # hg/gsid/pbGsid/pbGsid.c +pbt.right1 # hg/gsid/pbGsid/pbGsid.c +pbt.right2 # hg/gsid/pbGsid/pbGsid.c +pbt.right3 # hg/gsid/pbGsid/pbGsid.c +pbt.tui # hg/gsid/pbGsid/pbGsid.c +pdf # hg/altSplice/affySplice/spliceProbeVis.c +percentId # hg/mouseStuff/knownVsBlat/knownVsBlat.c +permission # hg/hgTracks/myVariantsTrack.c +phase # hg/hgText/hgText.c +phyloPng_branchDecimals # hg/phyloPng/phyloPng.c +phyloPng_branchLabels # hg/phyloPng/phyloPng.c +phyloPng_branchLengths # hg/phyloPng/phyloPng.c +phyloPng_branchMultiplier # hg/phyloPng/phyloPng.c +phyloPng_dash_to_space # hg/phyloPng/phyloPng.c +phyloPng_height # hg/phyloPng/phyloPng.c +phyloPng_htmlPage # hg/phyloPng/phyloPng.c +phyloPng_lengthLegend # hg/phyloPng/phyloPng.c +phyloPng_monospace # hg/phyloPng/phyloPng.c +phyloPng_restore # hg/phyloPng/phyloPng.c +phyloPng_submit # hg/phyloPng/phyloPng.c +phyloPng_tree # hg/phyloPng/phyloPng.c +phyloPng_under_to_space # hg/phyloPng/phyloPng.c +phyloPng_undersuff_strip # hg/phyloPng/phyloPng.c +phyloPng_width # hg/phyloPng/phyloPng.c +picky # hg/autoXml/autoXml.c +positive # hg/autoXml/autoXml.c +postIntron # hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c +preIntron # hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c +primer3 # hg/cgilib/hgSeq.c +priority # hg/qaPushQ/qaPushQ.c +project # hg/hgTracks/myVariantsTrack.c +psl # hg/sim4big/sim4big.c +pslPat # hg/mouseStuff/subsetTraces/subsetTraces.c +pslTable # hg/hgc/hgc.c +publicHubs # hg/hubApi/hubApi.c +pubsFilterArticleId # hg/hgTracks/pubsTracks.c +pushbutton # hg/qaPushQ/qaPushQ.c +qadate # hg/qaPushQ/qaPushQ.c +qc # hg/hgc/hgc.c +qe # hg/hgc/hgc.c +qid # hg/qaPushQ/qaPushQ.c +qlSourceDb # hg/hgTrackUi/hgTrackUi.c +qs # hg/hgc/hgc.c +query # hg/pslUnpile/pslUnpile.c +r # hg/hgc/hgc.c +ra # hg/encode/hgEncodeVocab/hgEncodeVocab.c +randSeed # hg/oneShot/cartSimNoInsert/cartSimNoInsert.c +readOnly # hg/oneShot/cartSimNoInsert/cartSimNoInsert.c +reason # hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c +ref # hg/das/das.c +remoteFile # hg/hgPhyloPlace/hgPhyloPlace.c +report # hg/encode/docId/docIdView/docIdView.c +retries # hg/gigAssembler/codJobs/jabba/jabba.c +reward # hg/pslFilterBadCdna/pslFilterBadCdna.c +ring_action # hg/hgGeneRing/hgGeneRing.c +s # hg/hgBlat/hgBlat.c +sarsCoV2File # hg/hgPhyloPlace/hgPhyloPlace.c +selectRadio # hg/hubApi/hubApi.c +seqIdent # hg/affyGnf/pslAffySelect.c +seqTable # hg/hgc/hgc.c +shareToken # hg/hgTracks/myVariantsTrack.c +showAllCtdRef # hg/hgGene/ctd.c +showLonglabel # hg/hgApi/hgApi.c +showNumbers # hg/gigAssembler/ooGreedy/protDust/protDust.c +showSizes # hg/qaPushQ/qaPushQ.c +simple # hg/oneShot/testXap/testXap.c +sizeMB # hg/qaPushQ/qaPushQ.c +skipPName # hg/altSplice/affySplice/spliceProbeVis.c +sourceSelected # hg/hubApi/hubApi.c +spacesEvery # hg/gigAssembler/ooGreedy/protDust/protDust.c +spacing # hg/ctgToChromFa/ctgToChromFa.c +spliceAIindels # hg/cgilib/cartEdit7.c +spliceAIindelsMasked # hg/cgilib/cartEdit7.c +spliceAIsnvs # hg/cgilib/cartEdit7.c +spliceAIsnvsMasked # hg/cgilib/cartEdit7.c +sqlTable # hg/makeDb/hgLoadSample/hgLoadSample.c +st # hg/gsid/gsidMember/gsidMember.c +startIntron # hg/gigAssembler/ooGreedy/scanIntrons/scanIntrons.c +startRange # hg/gigAssembler/ooGreedy/getgene/getgene.c +stat # hg/qaPushQ/qaPushQ.c +stop # hg/das/das.c +stopUpload # hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c +strand # hg/gigAssembler/ooGreedy/getgene/getgene.c +stretch # hg/uniqSize/uniqSize.c +submit # hg/hgCustom/hgCustom.c +submitUrl # hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c +submit_filter # hg/gisaid/gisaidTable/gisaidTable.c +suffix # hg/affyTransciptome/avgTranscriptomeExps.c +t # hg/hgc/cgapSageClick.c +tab # hg/makeDb/hgLoadSample/hgLoadSample.c +table2 # hg/hgText/hgText.c +tag # hg/encode/hgEncodeVocab/hgEncodeVocab.c +target # hg/encode/hgEncodeVocab/hgEncodeVocab.c +targetUser # hg/hgTracks/myVariantsTrack.c +tbCtDesc # hg/hgText/hgText.c +tbCtName # hg/hgText/hgText.c +tbCtUrl # hg/hgText/hgText.c +tbCtVis # hg/hgText/hgText.c +tbDoCustomTrack # hg/hgText/hgText.c +tbIntersectOp # hg/hgText/hgText.c +tbInvertTable # hg/hgText/hgText.c +tbInvertTable2 # hg/hgText/hgText.c +tbLessThresh # hg/hgText/hgText.c +tbMoreThresh # hg/hgText/hgText.c +tbShowPasteResults # hg/hgText/hgText.c +tbShowUploadResults # hg/hgText/hgText.c +tbUserKeys # hg/hgText/hgText.c +tempDir # hg/sim4big/sim4big.c +term # hg/encode/hgEncodeVocab/hgEncodeVocab.c +test # hg/liftAgp/liftAgp.c +text # hg/oneShot/testXap/testXap.c +textField # hg/autoXml/autoXml.c +tier # hg/encode/hgEncodeVocab/hgEncodeVocab.c +tiers # hg/encode/hgEncodeVocab/hgEncodeVocab.c +tis # hg/lib/gtexUi.c +tiss # hg/hgc/cgapSageClick.c +toOrg # hg/qaPushQ/qaPushQ.c +tracePat # hg/mouseStuff/subsetTraces/subsetTraces.c +trackOffset # hg/protein/lib/doTracks.c +transId # hg/cgiExample/cgiExample.c +transfer # hg/qaPushQ/qaPushQ.c +translate # hg/gigAssembler/ooGreedy/getgene/getgene.c +trumpSize # hg/altSplice/spliceWalk/spliceWalk.c +txn_id # hg/gsid/gsidMember/gsidMember.c +u # hg/hgBlat/hgBlat.c +ucscGenome # hg/hubApi/hubApi.c +unzoom # hg/wikiPlot/wikiPlot.c +update # hg/hgLogin/hgLogin.c +url # hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c +useSubmitFname # hg/cirm/cdw/cdwGetFile/cdwGetFile.c +user # hg/hgLogin/hgLogin.c +userCount # hg/oneShot/cartSimNoInsert/cartSimNoInsert.c +userName # hg/cirm/cdw/cdwGetMetadataAsFile/cdwGetMetadataAsFile.c +utr5 # hg/gigAssembler/ooGreedy/getgene/getgene.c +ver # hg/agpCloneList/agpCloneList.c +verify_sign # hg/gsid/gsidMember/gsidMember.c +version # hg/useCount/useCount.c +virtMode # hg/lib/web.c +warnTime # hg/gigAssembler/codJobs/jabba/jabba.c +where # hg/getFeatDna/getFeatDna.c +wikiCommentText # hg/hgGene/wikiTrack.c +withUtr # hg/intronEnds/intronEnds.c +xOff # hg/wikiPlot/wikiPlot.c +yOff # hg/wikiPlot/wikiPlot.c +zoom # hg/wikiPlot/wikiPlot.c