b20d369b166f18509c1fd18682ffc4fc5a5aac09
braney
  Thu Aug 21 17:38:37 2025 -0700
working on detail page for quickLift Chain.

diff --git src/hg/inc/quickLift.h src/hg/inc/quickLift.h
index e7a5345f020..77e215023d8 100644
--- src/hg/inc/quickLift.h
+++ src/hg/inc/quickLift.h
@@ -1,36 +1,62 @@
 /* quickLift genome annotations on the fly between assemblies using chain files */
 
 /* Copyright (C) 2023 The Regents of the University of California 
  * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef QUICKLIFT_H      
 #define QUICKLIFT_H      
 
 #define quickLiftCartName     "hubQuickLift"
 
+struct quickLiftRegions
+// store highlight information
+{
+struct quickLiftRegions *next;
+unsigned type;
+long chromStart;
+long chromEnd;
+long oChromStart;
+long oChromEnd;
+char *otherBases;
+unsigned otherCount;
+char * id;
+};
+
+#define QUICKTYPE_INSERT     0
+#define QUICKTYPE_DEL      1
+#define QUICKTYPE_DOUBLE     2
+#define QUICKTYPE_MISMATCH     3
+#define QUICKTYPE_NOTHING     4
+
+extern char *quickTypeStrings[];
+
 typedef struct slList *(*ItemLoader2)(char **row, int numFields);
 /* Load a bed file from an SQL query result. */
 
 struct bigBedInterval *quickLiftGetIntervals(char *instaPortFile, struct bbiFile *bbi,   char *chrom, int start, int end, struct hash **pChainHash);
 /* Return intervals from "other" species that will map to the current window.
  * These intervals are NOT YET MAPPED to the current assembly.
  */
 
 struct bed *quickLiftIntervalsToBed(struct bbiFile *bbi, struct hash *chainHash, struct bigBedInterval *bb);
 /* Using chains stored in chainHash, port a bigBedInterval from another assembly to a bed
  * on the reference.
  */
 
 struct slList *quickLiftSql(struct sqlConnection *conn, char *quickLiftFile, char *table, char *chromName, int winStart, int winEnd,  char *query, char *extraWhere, ItemLoader2 loader, int numFields, struct hash *chainHash);
 /* Load a list of items (usually beds) from another database in a region that corresponds to chromName:winStart-winEnd in the reference database.
  * Fill a hash with the chains that were used to map the desired range.  These chains will be used to map the query side items back to the reference. */
 
 unsigned quickLiftGetChain(char *fromDb, char *toDb);
 /* Return the id from the quickLiftChain table for given assemblies. */
 
 struct bed *quickLiftBeds(struct bed *bedList, struct hash *chainHash, boolean blocked);
 // Map a list of bedd in query coordinates to our current reference
 
 boolean quickLiftEnabled();
 /* Return TRUE if feature is available */
+
+struct quickLiftRegions *quickLiftGetRegions(char *ourDb, char *liftDb, char *quickLiftFile, char *chrom, int seqStart, int seqEnd);
+/* Figure out the highlight regions and cache them. */
+
 #endif