96d7a1cc2f69c3989b4ca7cc2e94ef2b8df310dd brianlee Tue Mar 4 11:18:54 2025 -0800 Adding tiff and avi to cdwSubmit.c and cdwMakeValidFile.c for ingest diff --git src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c index a5785aa78fa..3ac928267d5 100644 --- src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c +++ src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c @@ -561,30 +561,31 @@ } boolean isSupportedFormat(char *format) /* Return TRUE if this is one of our supported formats */ { /* First deal with non bigBed */ static char *otherSupportedFormats[] = {"unknown", "fastq", "bam", "bed", "gtf", "bam.bai", "vcf.gz.tbi", "bigWig", "bigBed", "bedLogR", "bedRrbs", "bedMethyl", "broadPeak", "narrowPeak", "bed_bedLogR", "bed_bedRrbs", "bed_bedMethyl", "bed_broadPeak", "bed_narrowPeak", "bedRnaElements", "openChromCombinedPeaks", "peptideMapping", "shortFrags", "rcc", "idat", "fasta", "customTrack", "pdf", "png", "vcf", "cram", "jpg", "text", "html", "tsv", "csv", "raw", "xls", + "tiff", "avi", "kallisto_abundance", "expression_matrix", }; static int otherSupportedFormatsCount = ArraySize(otherSupportedFormats); if (stringArrayIx(format, otherSupportedFormats, otherSupportedFormatsCount) >= 0) return TRUE; /* If starts with bed_ then skip over prefix. It will be caught by bigBed */ if (startsWith("bed_", format)) format += 4; return cdwIsSupportedBigBedFormat(format); } void prefetchChecks(char *format, char *fileName, char *submitDir) /* Perform some basic format checks. */ {