9d09caa835a6fc52549a947f251e9815b5501744
brianlee
  Mon Aug 18 14:22:58 2025 -0700
Making SSPsyGene UCLA Aim3 milestones more readable, removed empty verbiage (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe)

diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
index 9bd3f0053d7..2ccad65f180 100755
--- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
+++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
@@ -70,45 +70,45 @@
 ADGC1_Q_111213 Submit L0-L1 from Batch E-G, producing bulk RNA-seq profiles (3 technical replicates, 4 biological replicates per gene x (20 NPD iPSC lines + 2 controls) x 2 backgrounds (KOLF2.2J/CIRM) iPSC background lines; fastq)) : crit, milestone, ADGC1_Q_111213, 2027-04-01, 0d
 ADGC1_JK_14 Complete villages (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_JK_14, 2025-10-01, 0d
 ADGC1_LM_14 Village Analysis (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_LM_14, 2026-04-01, 0d
 ADGC1_K_15 Calcium Imaging Capstone Analysis (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_15, 2025-09-30, 0d
 ADGC1_M_15 Calcium Imaging analysis excitatory/inhibitory neurons - Capstone Analysis (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_15, 2026-04-01, 0d
     ADGC1_NOPQ_15 Calcium Imaging Experiments and analysis of future batches (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L4 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_NOPQ_15, 2027-04-01, 0d
     
     section AIM 3
     Begin organoids first 20  :  t26, 2024-07-01,13w
     Prepare samples for RNAseq  : t27,  after t26,13w
     Perform RNAseq   : t28, after t27,13w
     Begin RNAseq Analysis  : t29, after t28,13w
     Prepare samples for CODEX:  t30, after t27,13w
     Perform CODEX: t31, after t30,13w
     Submit first Spatial Imaging data: crit, t32, after t31,13w
-ADGC1_J_161718 Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_J_161718, 2025-07-01, 0d
-ADGC1_K_161718 Spatial Proteomics Analysis Capstone Lines (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d
-ADGC1_L_161718 Perform codex Batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d
-ADGC1_M_161718 Spatial Proteomics Analysis Batch B (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_161718, 2026-04-01, 0d
-ADGC1_N_161718 Perform codex Batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_N_161718, 2027-04-01, 0d
-ADGC1_O_161718 Spatial Proteomics Analysis Batch C (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_O_161718, 2027-04-01, 0d
-ADGC1_Q_161718 Perform codex and analysis for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_Q_161718, 2027-04-01, 0d
-ADGC1_J_1920 Organoid snRNAseq analysis for Capstone Genes (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_J_1920, 2025-07-01, 0d
-ADGC1_K_1920 Perform snRNAseq for batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d
-ADGC1_L_1920 Organoid snRNAseq analysis for batch B (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d
-ADGC1_M_1920 Perform snRNAseq for batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_1920, 2026-04-01, 0d
-ADGC1_N_1920 Organoid snRNAseq analysis C (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_N_1920, 2027-04-01, 0d
-ADGC1_O_1920 Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-04-01, 0d
-ADGC1_P_1920 Perform snRNAseq for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d
-ADGC1_Q_1920 Organoid snRNAseq Analysis for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_Q_1920, 2027-04-01, 0d
+    Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_J_161718, 2025-07-01, 0d
+    Spatial Proteomics Analysis Capstone Lines   : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d
+    Perform codex Batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d
+    Spatial Proteomics Analysis Batch B   : crit, milestone, ADGC1_M_161718, 2026-04-01, 0d
+    Perform codex Batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_N_161718, 2027-04-01, 0d
+    Spatial Proteomics Analysis Batch C   : crit, milestone, ADGC1_O_161718, 2027-04-01, 0d
+    Perform codex and analysis for future batches   : crit, milestone, ADGC1_Q_161718, 2027-04-01, 0d
+    Organoid snRNAseq analysis for Capstone Genes   : crit, milestone, ADGC1_J_1920, 2025-07-01, 0d
+    Perform snRNAseq for batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format)   : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d
+    Organoid snRNAseq analysis for batch B   : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d
+    Perform snRNAseq for batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format)   : crit, milestone, ADGC1_M_1920, 2026-04-01, 0d
+    Organoid snRNAseq analysis C   : crit, milestone, ADGC1_N_1920, 2027-04-01, 0d
+    Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-04-01, 0d
+    Perform snRNAseq for future batches   : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d
+    Organoid snRNAseq Analysis for future batches   : crit, milestone, ADGC1_Q_1920, 2027-04-01, 0d
     
     </pre>
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   <a name="ADGC2"></a>
   <!-- Start of ADGC2 Henry Gantt Chart-->
   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC2 MiNND timeline</h5></div>
   <div class="row">
     <div class="col-md-12">
       <pre class="mermaid">    
         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC2  MiNND