9d09caa835a6fc52549a947f251e9815b5501744 brianlee Mon Aug 18 14:22:58 2025 -0700 Making SSPsyGene UCLA Aim3 milestones more readable, removed empty verbiage (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html index 9bd3f0053d7..2ccad65f180 100755 --- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html +++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html @@ -70,45 +70,45 @@ ADGC1_Q_111213 Submit L0-L1 from Batch E-G, producing bulk RNA-seq profiles (3 technical replicates, 4 biological replicates per gene x (20 NPD iPSC lines + 2 controls) x 2 backgrounds (KOLF2.2J/CIRM) iPSC background lines; fastq)) : crit, milestone, ADGC1_Q_111213, 2027-04-01, 0d ADGC1_JK_14 Complete villages (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_JK_14, 2025-10-01, 0d ADGC1_LM_14 Village Analysis (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_LM_14, 2026-04-01, 0d ADGC1_K_15 Calcium Imaging Capstone Analysis (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_15, 2025-09-30, 0d ADGC1_M_15 Calcium Imaging analysis excitatory/inhibitory neurons - Capstone Analysis (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_15, 2026-04-01, 0d ADGC1_NOPQ_15 Calcium Imaging Experiments and analysis of future batches (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; tif format) (Submit L0-L4 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_NOPQ_15, 2027-04-01, 0d section AIM 3 Begin organoids first 20 : t26, 2024-07-01,13w Prepare samples for RNAseq : t27, after t26,13w Perform RNAseq : t28, after t27,13w Begin RNAseq Analysis : t29, after t28,13w Prepare samples for CODEX: t30, after t27,13w Perform CODEX: t31, after t30,13w Submit first Spatial Imaging data: crit, t32, after t31,13w -ADGC1_J_161718 Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_J_161718, 2025-07-01, 0d -ADGC1_K_161718 Spatial Proteomics Analysis Capstone Lines (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d -ADGC1_L_161718 Perform codex Batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d -ADGC1_M_161718 Spatial Proteomics Analysis Batch B (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_161718, 2026-04-01, 0d -ADGC1_N_161718 Perform codex Batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_N_161718, 2027-04-01, 0d -ADGC1_O_161718 Spatial Proteomics Analysis Batch C (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_O_161718, 2027-04-01, 0d -ADGC1_Q_161718 Perform codex and analysis for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_Q_161718, 2027-04-01, 0d -ADGC1_J_1920 Organoid snRNAseq analysis for Capstone Genes (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_J_1920, 2025-07-01, 0d -ADGC1_K_1920 Perform snRNAseq for batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d -ADGC1_L_1920 Organoid snRNAseq analysis for batch B (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d -ADGC1_M_1920 Perform snRNAseq for batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_M_1920, 2026-04-01, 0d -ADGC1_N_1920 Organoid snRNAseq analysis C (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_N_1920, 2027-04-01, 0d -ADGC1_O_1920 Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-04-01, 0d -ADGC1_P_1920 Perform snRNAseq for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d -ADGC1_Q_1920 Organoid snRNAseq Analysis for future batches (Submit L0-L1 to DRACC on a rolling basis once completed during this timeframe) : crit, milestone, ADGC1_Q_1920, 2027-04-01, 0d + Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_J_161718, 2025-07-01, 0d + Spatial Proteomics Analysis Capstone Lines : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d + Perform codex Batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d + Spatial Proteomics Analysis Batch B : crit, milestone, ADGC1_M_161718, 2026-04-01, 0d + Perform codex Batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format) : crit, milestone, ADGC1_N_161718, 2027-04-01, 0d + Spatial Proteomics Analysis Batch C : crit, milestone, ADGC1_O_161718, 2027-04-01, 0d + Perform codex and analysis for future batches : crit, milestone, ADGC1_Q_161718, 2027-04-01, 0d + Organoid snRNAseq analysis for Capstone Genes : crit, milestone, ADGC1_J_1920, 2025-07-01, 0d + Perform snRNAseq for batch B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d + Organoid snRNAseq analysis for batch B : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d + Perform snRNAseq for batch C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format) : crit, milestone, ADGC1_M_1920, 2026-04-01, 0d + Organoid snRNAseq analysis C : crit, milestone, ADGC1_N_1920, 2027-04-01, 0d + Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-04-01, 0d + Perform snRNAseq for future batches : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d + Organoid snRNAseq Analysis for future batches : crit, milestone, ADGC1_Q_1920, 2027-04-01, 0d </pre> </div> </div> <a name="ADGC2"></a> <!-- Start of ADGC2 Henry Gantt Chart--> <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC2 MiNND timeline</h5></div> <div class="row"> <div class="col-md-12"> <pre class="mermaid"> gantt dateFormat YYYY-MM-DD axisFormat %Y-Q%q title ADGC2 MiNND