574399b4a7d8fc75c1745fa83564f547ddcb9e8c
chmalee
  Sat Jun 13 00:43:54 2026 -0700
gnomAD v4.1.1 gene constraint tracks for hg38, refs #37351

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/hg38/gnomad.ra src/hg/makeDb/trackDb/human/hg38/gnomad.ra
index c314491dd8b..16237e54e2c 100644
--- src/hg/makeDb/trackDb/human/hg38/gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg38/gnomad.ra
@@ -277,31 +277,32 @@
 longLabel Gnocchi: Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation, includes chrX
 bigDataUrl /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.bw
 type bigWig
 setColorWith /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.color.bb
 windowingFunction minimum
 altColor 0,150,0
 color 150,0,0
 maxHeightPixels 128:40:8
 viewLimitsMax -3:3
 autoScale on
 priority 10
 dataVersion Release 3.1.2 (October 22, 2021)
 html gnomadConstraint
 
 # The missense and pLI contraint tracks
-include gnomad.constraint.public.ra
+include gnomad.constraint.public.ra beta,public
+include gnomad.constraint.alpha.ra alpha
 include gnomadCoverage.ra
 
 track gnomadStructuralVariants
 parent gnomadVariants on
 bigDataUrl /gbdb/hg38/gnomAD/v4/structuralVariants/gnomad.v4.1.sv.non_neuro_controls.sites.bb
 shortLabel gnomAD Structural Variants
 longLabel Genome Aggregation Database (gnomAD) - Structural Variants v4.1
 dataVersion Release 4.1 (November 01, 2023)
 type bigBed 9 +
 itemRgb on
 visibility hide
 url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r4
 urlLabel gnomAD Structural Variant Browser
 filter.af_non_neuro 0:1
 filterByRange.af_non_neuro on