21396a5cf38d93981f29215f391ffe421ef0cdb1 gperez2 Wed Mar 5 11:54:03 2025 -0800 Updating the SpliceVarDB track URL in the newsarch.html, refs #34823 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index f097443be12..6df494a36d2 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -64,31 +64,31 @@ <!-- ============= 2025 archived news ============= --> <a name="2025"></a> <a name="030525"></a> <h2>Mar. 05, 2025 New Splicing Impact Prediction Scores super track (hg19/hg38) and SpliceVarDB track for hg38</h2> <p> We are excited to announce the new Splicing Impact Prediction Scores and Databases super track for the <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg38&g=spliceImpactSuper&position=default">hg38/GRCh38</a> and <a target="_blank" href="/cgi-bin/hgTrackUi?db=hg19&g=spliceImpactSuper&position=default">hg19/GRCh37</a> human assemblies. This super track includes the <a target="_blank" href="newsarch.html#042524">AbSplice Scores</a>, <a target="_blank" href="newsarch.html#081224">SpliceAI</a>, and, for hg38, the new <a target="_blank" -href="/cgi-bin/hgTrackUi?db=hg38&g=spliceImpactSuper&position=default">SpliceVarDB track</a>. +href="/cgi-bin/hgTrackUi?db=hg38&g=spliceVarDb&position=default">SpliceVarDB track</a>. <a target="_blank" href="https://splicevardb.org/">SpliceVarDB</a> is an online database consolidating over 50,000 variants assayed for their effects on splicing in over 8,000 human genes. The SpliceVarDB authors evaluated over 500 published data sources and established a spliceogenicity scale to standardize, harmonize, and consolidate variant validation data generated by a range of experimental protocols. SpliceVarDB data is displayed as lollipop plots, color-coded by score value. A score of <b>3</b> indicates a <span style="color: rgb(219,61,61);">Splice-altering</span></li> variant, <b>2</b> represents a <span style="color: rgb(128,82,160);">Low-frequency</span> variant, <b>1</b> is classified as <span style="color: rgb(57,135,204);">Normal</span>, and <b>0</b> denotes <span style="color: rgb(140,140,140);">Conflicting</span> data. </p> <div class="text-center"> <a href="https://genome.ucsc.edu/s/gperez2/SpliceVarDB" target="_blank"> <img src="../images/newsArchImages/SpliceVarDB.jpg" alt="hg38 session