59fb440ba930a3f0eaee0af6e7fe6a2526b10551
gperez2
Wed Dec 3 11:49:31 2025 -0800
More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531
diff --git src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
index c7984ac099c..b0696640eac 100644
--- src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
@@ -1,21 +1,22 @@
track gnomadSuper
superTrack on
shortLabel gnomAD
longLabel Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint
group varRep
html gnomad
+pennantIcon Updated red ../goldenPath/newsarch.html#120325 "New gnomAD MPC track Dec. 03, 2025"
track gnomadCoverage
compositeTrack on
parent gnomadSuper
shortLabel gnomAD Coverage
longLabel Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage
group varRep
dataVersion Release 2.0.2
visibility dense
subGroup1 view Views gAvg=GenomesAverage eAvg=ExomesAverage gRDepth=GenomesReadDepth eRDepth=ExomesReadDepth
type bigWig
html gnomadCoverage
track gnomadGenomesAvgCoverage
parent gnomadCoverage on
@@ -932,30 +933,31 @@
detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.exomes.popTable.txt
html gnomadExomesGenomes
track gnomadMpc
parent gnomadSuper
shortLabel gnomAD MPC
longLabel gnomAD Missense Deleteriousness Prediction by Constraint (MPC)
visibility pack
group varRep
type bigBed 9 +
mouseOver Transcript: $trans
Obs/Exp (OE): $oe
Chi-square: $chisq
P-val: $pval
bigDataUrl /gbdb/hg19/gnomAD/mpc/mpc.bb
dataVersion Release 2.1.1 (Oct, 2025)
html gnomadMpc.html
noParentConfig on
+ pennantIcon New red ../goldenPath/newsarch.html#120325 "Released Dec. 03, 2025"
searchTable pliByTranscript
searchType bigBed
searchDescription gnomAD Loss of Function Metrics by Transcript
searchTable pliByGene
searchType bigBed
searchDescription gnomAD Loss of Function Metrics by Gene
searchTable gnomadSvFull
searchType bigBed
searchDescription gnomAD Structural Variants - All structural variants
searchTable gnomadSvNonneuro
searchType bigBed