59fb440ba930a3f0eaee0af6e7fe6a2526b10551 gperez2 Wed Dec 3 11:49:31 2025 -0800 More updates to gnomadMpc.html and releasing/announcing the hg19 gnomAD MPC track, refs #36531 diff --git src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra index c7984ac099c..b0696640eac 100644 --- src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra +++ src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra @@ -1,21 +1,22 @@ track gnomadSuper superTrack on shortLabel gnomAD longLabel Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint group varRep html gnomad +pennantIcon Updated red ../goldenPath/newsarch.html#120325 "New gnomAD MPC track Dec. 03, 2025" track gnomadCoverage compositeTrack on parent gnomadSuper shortLabel gnomAD Coverage longLabel Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage group varRep dataVersion Release 2.0.2 visibility dense subGroup1 view Views gAvg=GenomesAverage eAvg=ExomesAverage gRDepth=GenomesReadDepth eRDepth=ExomesReadDepth type bigWig html gnomadCoverage track gnomadGenomesAvgCoverage parent gnomadCoverage on @@ -932,30 +933,31 @@ detailsStaticTable Population Frequencies|/gbdb/hg19/gnomAD/variants/v2.1.1.exomes.popTable.txt html gnomadExomesGenomes track gnomadMpc parent gnomadSuper shortLabel gnomAD MPC longLabel gnomAD Missense Deleteriousness Prediction by Constraint (MPC) visibility pack group varRep type bigBed 9 + mouseOver <b>Transcript:</b> $trans<br><b>Obs/Exp (OE):</b> $oe<br><b>Chi-square:</b> $chisq<br><b>P-val:</b> $pval bigDataUrl /gbdb/hg19/gnomAD/mpc/mpc.bb dataVersion Release 2.1.1 (Oct, 2025) html gnomadMpc.html noParentConfig on + pennantIcon New red ../goldenPath/newsarch.html#120325 "Released Dec. 03, 2025" searchTable pliByTranscript searchType bigBed searchDescription gnomAD Loss of Function Metrics by Transcript searchTable pliByGene searchType bigBed searchDescription gnomAD Loss of Function Metrics by Gene searchTable gnomadSvFull searchType bigBed searchDescription gnomAD Structural Variants - All structural variants searchTable gnomadSvNonneuro searchType bigBed