062e08e4116be810b29621d9863e22bffdedcf50 gperez2 Sun Aug 2 23:45:08 2026 -0700 Updating gnomad.html's Constraint Metrics bullet to say per-gene is only available for v2.1.1, and gnomadPLI.html's flags-section field count, Transcripts Included version list, shading description (pLI to LOEUF), and missense track color description. refs #37351 diff --git src/hg/makeDb/trackDb/human/hg38/gnomad.html src/hg/makeDb/trackDb/human/hg38/gnomad.html index 094cd2e55f5..fa246071bd9 100644 --- src/hg/makeDb/trackDb/human/hg38/gnomad.html +++ src/hg/makeDb/trackDb/human/hg38/gnomad.html @@ -26,32 +26,32 @@
  • gnomAD v3.1.1 — Shows variants from 76,156 whole genomes (and no exomes), all mapped to GRCh38/hg38.
  • Deprecated: gnomAD v3.1 — Same underlying data as v3.1.1 with older annotations. Do not use; will be removed soon.
  • gnomAD v3 — Shows variants from 71,702 whole genomes from the v3.0 release.
  • gnomAD v2 — Shows variants from 125,748 exomes and 15,708 whole genomes, lifted from GRCh37/hg19 to GRCh38/hg38.
  • gnomAD Mut Constraint — Shows the reduced variation caused by purifying natural selection for 1kbp windows across the genome (based on v3.1.2).
  • gnomAD Constraint -Metrics — Contains per-gene and per-transcript metrics of pathogenicity -(LOEUF, pLI, and Z-scores) for v2.1.1, v4, v4.1, and v4.1.1.
    • +Metrics — Contains per-gene (v2.1.1 only) and per-transcript metrics of +pathogenicity (LOEUF, pLI, and Z-scores) for v2.1.1, v4, v4.1, and v4.1.1.
  • gnomAD v3 Genome Coverage — Shows various read depth metrics for genome samples from v3.0.1.
  • gnomAD v4 Exome Coverage — Shows various read depth metrics for exome samples from v4.0.
  • gnomAD Structural Variants — Shows structural variant calls (variants >=50 nucleotides) from gnomAD v4.1.
  • gnomAD Rare CNV Variants — Shows rare copy number variants (<1% overall site frequency) from gnomAD v4.1.
  • gnomAD STR — Shows short tandem repeat genotypes at disease-associated loci from gnomAD v3.1.3.