195d8eff01e3453a9027c0b679c68410e197f3c7
gperez2
  Fri Jul 31 13:58:07 2026 -0700
Adding release tags to the gnomadVariantsV4.1 composite and its gnomadExomesVariantsV4_1/gnomadGenomesVariantsV4_1 subtracks. refs #37351

diff --git src/hg/makeDb/trackDb/human/hg38/gnomad.ra src/hg/makeDb/trackDb/human/hg38/gnomad.ra
index e181c49c615..39cb46d815a 100644
--- src/hg/makeDb/trackDb/human/hg38/gnomad.ra
+++ src/hg/makeDb/trackDb/human/hg38/gnomad.ra
@@ -120,30 +120,31 @@
     html gnomadV3.html
 
     track gnomadVariantsV4.1
     parent gnomadVariants
     compositeTrack on
     shortLabel gnomAD v4.1.1
     longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants v4.1.1
     type bigBed 9 +
     configureByPopup off
     maxWindowCoverage 200000
     maxItems 50000
     dataVersion Release v4.1.1 (March 30, 2026)
     html gnomadV4.1
     priority 1
     visibility squish
+    release alpha
 
         track gnomadExomesVariantsV4_1
         parent gnomadVariantsV4.1 on
         visibility squish
         shortLabel gnomAD v4.1.1 Exomes
         longLabel Genome Aggregation Database (gnomAD) Exomes Variants v4.1.1
         dataVersion Release v4.1.1 (March 30, 2026)
         type bigBed 9 +
         itemRgb on
         searchIndex name,_displayName,rsId
         html gnomadV4.1
         bigDataUrl /gbdb/hg38/gnomAD/v4.1.1/exomes/exomes.bb
         priority 2
         labelFields rsId,_displayName
         defaultLabelFields _displayName
@@ -151,30 +152,31 @@
         skipEmptyFields on
         filterValues.annot pLoF,missense,synonymous,other
         filterValuesDefault.annot pLoF,missense,synonymous
         filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)
         filterType.FILTER multipleListAnd
         filterValuesDefault.FILTER PASS
         filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
         filterType.variation_type multipleListOr
         filter.AF 0.0
         filterLabel.AF Minor Allele Frequency Filter
         mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd} ($ref/$alt)<br> <b>TotalAF</b>: ${AF} (${AC}/${AN})<br> <b>Genes</b>: $genes<br> <b>Annotation</b>: $annot<br> <b>FILTER</b>: ${FILTER}<br> <b>PopMaxAF</b>: ${grpmax}<br> <b>Homozygous Individuals</b>: ${nhomalt}<br> <b>Hemizygous Individuals (only in chrX & chrY)</b>: ${nhemi}
         url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r4
         urlLabel View this variant at gnomAD
         detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies
         detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1.1/exomes/gnomad.v4.1.1.exomes.details.tab.gz
+        release alpha
 
         track gnomadGenomesVariantsV4_1
         parent gnomadVariantsV4.1 on
         visibility squish
         shortLabel gnomAD v4.1.1 Genomes
         longLabel Genome Aggregation Database (gnomAD) Genome Variants v4.1.1
         dataVersion Release v4.1.1 (March 30, 2026)
         type bigBed 9 +
         itemRgb on
         searchIndex name,_displayName,rsId
         html gnomadV4.1
         bigDataUrl /gbdb/hg38/gnomAD/v4.1.1/genomes/genomes.bb
         priority 1
         labelFields rsId,_displayName
         defaultLabelFields _displayName
@@ -182,30 +184,110 @@
         skipEmptyFields on
         filterValues.annot pLoF,missense,synonymous,other
         filterValuesDefault.annot pLoF,missense,synonymous
         filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)
         filterType.FILTER multipleListAnd
         filterValuesDefault.FILTER PASS
         filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
         filterType.variation_type multipleListOr
         filter.AF 0.0
         filterLabel.AF Minor Allele Frequency Filter
         mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd} ($ref/$alt)<br> <b>TotalAF</b>: ${AF} (${AC}/${AN})<br> <b>Genes</b>: $genes<br> <b>Annotation</b>: $annot<br> <b>FILTER</b>: ${FILTER}<br> <b>PopMaxAF</b>: ${grpmax}<br> <b>Homozygous Individuals</b>: ${nhomalt}<br> <b>Hemizygous Individuals (only in chrX & chrY)</b>: ${nhemi}
         url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r4
         urlLabel View this variant at gnomAD
         detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies
         detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1.1/genomes/gnomad.v4.1.1.genomes.details.tab.gz
+        release alpha
+
+    track gnomadVariantsV4.1
+    parent gnomadVariants
+    compositeTrack on
+    shortLabel gnomAD v4.1
+    longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants v4.1
+    type bigBed 9 +
+    configureByPopup off
+    maxWindowCoverage 200000
+    maxItems 50000
+    dataVersion Release v4.1 (April 19, 2024)
+    html gnomadV4.1
+    priority 1
+    visibility squish
+    release beta,public
+
+        track gnomadExomesVariantsV4_1
+        parent gnomadVariantsV4.1 on
+        visibility squish
+        shortLabel gnomAD v4.1 Exomes
+        longLabel Genome Aggregation Database (gnomAD) Exomes Variants v4.1
+        dataVersion Release v4.1 (April 19, 2024)
+        type bigBed 9 +
+        itemRgb on
+        searchIndex name,_displayName,rsId
+        html gnomadV4.1
+        bigDataUrl /gbdb/hg38/gnomAD/v4.1/exomes/exomes.bb
+        priority 2
+        labelFields rsId,_displayName
+        defaultLabelFields _displayName
+        skipFields _displayName
+        skipEmptyFields on
+        filterValues.annot pLoF,missense,synonymous,other
+        filterValuesDefault.annot pLoF,missense,synonymous
+        filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)
+        filterType.FILTER multipleListAnd
+        filterValuesDefault.FILTER PASS
+        filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
+        filterType.variation_type multipleListOr
+        filter.AF 0.0
+        filterLabel.AF Minor Allele Frequency Filter
+        mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd} ($ref/$alt)<br> <b>TotalAF</b>: ${AF} (${AC}/${AN})<br> <b>Genes</b>: $genes<br> <b>Annotation</b>: $annot<br> <b>FILTER</b>: ${FILTER}<br> <b>PopMaxAF</b>: ${grpmax}<br> <b>Homozygous Individuals</b>: ${nhomalt}<br> <b>Hemizygous Individuals (only in chrX & chrY)</b>: ${nhemi}
+        url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r4
+        urlLabel View this variant at gnomAD
+        detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies
+        detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1/exomes/gnomad.v4.1.exomes.details.tab.gz
+        release beta,public
+
+        track gnomadGenomesVariantsV4_1
+        parent gnomadVariantsV4.1 on
+        visibility squish
+        shortLabel gnomAD v4.1 Genomes
+        longLabel Genome Aggregation Database (gnomAD) Genome Variants v4.1
+        dataVersion Release v4.1 (April 19, 2024)
+        type bigBed 9 +
+        itemRgb on
+        searchIndex name,_displayName,rsId
+        html gnomadV4.1
+        bigDataUrl /gbdb/hg38/gnomAD/v4.1/genomes/genomes.bb
+        priority 1
+        labelFields rsId,_displayName
+        defaultLabelFields _displayName
+        skipFields _displayName
+        skipEmptyFields on
+        filterValues.annot pLoF,missense,synonymous,other
+        filterValuesDefault.annot pLoF,missense,synonymous
+        filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)
+        filterType.FILTER multipleListAnd
+        filterValuesDefault.FILTER PASS
+        filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation
+        filterType.variation_type multipleListOr
+        filter.AF 0.0
+        filterLabel.AF Minor Allele Frequency Filter
+        mouseOver <b>Position</b>: $chrom:${chromStart}-${chromEnd} ($ref/$alt)<br> <b>TotalAF</b>: ${AF} (${AC}/${AN})<br> <b>Genes</b>: $genes<br> <b>Annotation</b>: $annot<br> <b>FILTER</b>: ${FILTER}<br> <b>PopMaxAF</b>: ${grpmax}<br> <b>Homozygous Individuals</b>: ${nhomalt}<br> <b>Hemizygous Individuals (only in chrX & chrY)</b>: ${nhemi}
+        url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$<ref>-$<alt>?dataset=gnomad_r4
+        urlLabel View this variant at gnomAD
+        detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies
+        detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1/genomes/gnomad.v4.1.genomes.details.tab.gz
+        release beta,public
 
 track gnomadConstraint
 parent gnomadVariants on
 shortLabel gnomAD Mut Constraint
 longLabel Gnocchi: Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation, includes chrX
 bigDataUrl /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.bw
 type bigWig
 setColorWith /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.color.bb
 windowingFunction minimum
 altColor 0,150,0
 color 150,0,0
 maxHeightPixels 128:40:8
 viewLimitsMax -3:3
 autoScale on
 priority 10